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STX4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:33.2 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:45.1 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.1
2666 Male, age 74, left hemisphere 37.3
1870 Female, age 42, unknown 37.0
1833 Male, age 53, unknown 35.9
1830 Male, age 51, unknown 35.4
2019 Male, age 18, unknown 34.7
1827 Male, age 72, unknown 34.6
2586 Male, age 75, left hemisphere 34.6
2828 Female, age 72, unknown 34.6
2411 Female, age 72, unknown 33.8
2219 Male, age 76, both hemispheres 32.6
Dorsal raphe nucleus
nTPM: 33.5
1828 Male, age 53, unknown 34.7
2750 Male, age 76, both hemispheres 34.4
2047 Male, age 72, unknown 33.4
2016 Female, age 72, unknown 33.1
2298 Female, age 72, unknown 31.8
Inferior colliculus
nTPM: 32.4
2849 Male, age 72, unknown 33.5
1890 Male, age 53, unknown 32.7
1848 Female, age 42, unknown 32.6
2097 Female, age 72, unknown 30.7
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Pedunculopontine tegmental nucleus
nTPM: 35.0
2334 Male, age 80, both hemispheres 37.2
2338 Male, age 61, both hemispheres 34.7
1921 Female, age 85, both hemispheres 33.2
Periaquaductal grey, anterior
nTPM: 32.6
1795 Male, age 51, unknown 33.3
1947 Male, age 18, unknown 32.9
2502 Female, age 75, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 31.8
2464 Female, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 31.9
1831 Male, age 72, unknown 31.4
1840 Male, age 53, unknown 30.5
Periaquaductal grey, lateral
nTPM: 31.7
2272 Male, age 74, both hemispheres 32.2
2053 Male, age 18, unknown 32.1
2140 Male, age 76, both hemispheres 30.8
Pretectal area
nTPM: 32.5
2407 Male, age 75, both hemispheres 34.7
2825 Male, age 18, unknown 34.0
2007 Male, age 72, unknown 33.5
1817 Female, age 42, unknown 33.3
1944 Female, age 72, unknown 32.9
1815 Male, age 53, unknown 32.7
1816 Male, age 51, unknown 32.5
2667 Female, age 75, unknown 32.1
2224 Female, age 72, unknown 31.6
2273 Male, age 74, both hemispheres 30.3
2316 Male, age 76, right hemisphere 30.3
Red nucleus
nTPM: 36.6
2588 Male, age 74, left hemisphere 38.5
1865 Male, age 51, unknown 38.3
2584 Male, age 75, left hemisphere 37.8
2769 Male, age 72, unknown 37.6
2503 Female, age 72, unknown 37.0
1904 Male, age 53, unknown 36.8
1821 Female, age 72, unknown 36.3
1954 Female, age 42, unknown 36.2
2227 Male, age 72, unknown 36.1
2785 Male, age 18, unknown 35.6
2725 Female, age 75, unknown 35.2
2823 Male, age 76, right hemisphere 33.6
Substantia nigra
nTPM: 34.7
2583 Male, age 75, right hemisphere 38.1
1916 Female, age 42, unknown 35.5
2409 Female, age 72, unknown 35.2
1851 Male, age 51, unknown 35.1
1889 Female, age 72, unknown 34.7
2699 Male, age 18, unknown 34.6
1941 Male, age 53, unknown 34.5
2590 Female, age 75, unknown 34.5
2665 Male, age 74, both hemispheres 32.6
2241 Male, age 72, unknown 32.4
Superior colliculus
nTPM: 33.4
2668 Female, age 75, unknown 36.2
2587 Male, age 74, left hemisphere 35.3
2664 Male, age 75, both hemispheres 34.4
1913 Female, age 42, unknown 33.5
1995 Male, age 72, unknown 33.4
1839 Male, age 51, unknown 32.6
2087 Female, age 72, unknown 32.4
1796 Male, age 53, unknown 32.3
2261 Male, age 18, unknown 32.1
1895 Male, age 76, right hemisphere 31.8
Ventral tegmental area
nTPM: 33.8
2223 Female, age 72, unknown 36.0
2218 Male, age 76, both hemispheres 33.9
1915 Female, age 42, unknown 33.8
2021 Male, age 53, unknown 33.7
2410 Female, age 72, unknown 33.7
1942 Male, age 51, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 60.8
Min nTPM: 16.9
Std nTPM: 7.4
Median nTPM: 32.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 60.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 50.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 43.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 42.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.2
FF:10158-103A5 76 years, female 49.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.9
Sample A Female 10.3
Sample B Female 7.7
Sample C Male 6.9
Sample D Male 7.0
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 7.5
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 7.3
Sample D Male 7.5
Substantia nigra
nTPM: 8.3
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.5
Sample A Female 9.4
Sample B Female 7.7
Sample C Male 7.5
Sample D Male 8.6
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.2
Sample A Female 7.5
Sample B Female 7.4
Sample C Male 6.2
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 52.0
Min nTPM: 41.4
Sample A Male 52.0
Sample B Male 44.4
Sample C Female 42.6
Sample D Female 41.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
576415 Antisense, RP_040826_01_G01, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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