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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:35.2 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.2
2411 Female, age 72, unknown 4.7
2019 Male, age 18, unknown 4.3
2219 Male, age 76, both hemispheres 4.3
1827 Male, age 72, unknown 4.2
2586 Male, age 75, left hemisphere 4.2
2666 Male, age 74, left hemisphere 4.2
2828 Female, age 72, unknown 4.2
1833 Male, age 53, unknown 4.1
1870 Female, age 42, unknown 4.0
1830 Male, age 51, unknown 3.9
Dorsal raphe nucleus
nTPM: 4.2
1828 Male, age 53, unknown 4.2
2016 Female, age 72, unknown 4.2
2047 Male, age 72, unknown 4.2
2298 Female, age 72, unknown 4.1
2750 Male, age 76, both hemispheres 4.0
Inferior colliculus
nTPM: 4.3
2097 Female, age 72, unknown 4.6
2849 Male, age 72, unknown 4.5
1890 Male, age 53, unknown 4.2
1848 Female, age 42, unknown 4.0
Median raphe nucleus
nTPM: 4.0
2220 Male, age 76, midline 4.0
Pedunculopontine tegmental nucleus
nTPM: 4.3
1921 Female, age 85, both hemispheres 4.7
2334 Male, age 80, both hemispheres 4.1
2338 Male, age 61, both hemispheres 4.1
Periaquaductal grey, anterior
nTPM: 4.1
1795 Male, age 51, unknown 4.2
1947 Male, age 18, unknown 4.1
2502 Female, age 75, unknown 4.1
Periaquaductal grey, dorsal
nTPM: 4.3
1831 Male, age 72, unknown 4.4
2464 Female, age 72, unknown 4.4
1840 Male, age 53, unknown 4.1
2850 Male, age 76, both hemispheres 4.1
Periaquaductal grey, lateral
nTPM: 4.3
2053 Male, age 18, unknown 4.4
2272 Male, age 74, both hemispheres 4.4
2140 Male, age 76, both hemispheres 4.2
Pretectal area
nTPM: 4.3
1817 Female, age 42, unknown 5.3
1816 Male, age 51, unknown 4.6
1944 Female, age 72, unknown 4.5
2407 Male, age 75, both hemispheres 4.3
2273 Male, age 74, both hemispheres 4.2
1815 Male, age 53, unknown 4.1
2007 Male, age 72, unknown 4.1
2224 Female, age 72, unknown 4.1
2667 Female, age 75, unknown 4.1
2825 Male, age 18, unknown 4.1
2316 Male, age 76, right hemisphere 4.0
Red nucleus
nTPM: 4.2
2725 Female, age 75, unknown 4.5
2785 Male, age 18, unknown 4.5
2769 Male, age 72, unknown 4.4
1821 Female, age 72, unknown 4.3
1904 Male, age 53, unknown 4.3
2503 Female, age 72, unknown 4.2
2584 Male, age 75, left hemisphere 4.2
2588 Male, age 74, left hemisphere 4.2
2227 Male, age 72, unknown 4.1
2823 Male, age 76, right hemisphere 4.1
1865 Male, age 51, unknown 4.0
1954 Female, age 42, unknown 4.0
Substantia nigra
nTPM: 4.2
1851 Male, age 51, unknown 4.4
2409 Female, age 72, unknown 4.4
1941 Male, age 53, unknown 4.3
1889 Female, age 72, unknown 4.2
2241 Male, age 72, unknown 4.2
2583 Male, age 75, right hemisphere 4.2
2665 Male, age 74, both hemispheres 4.2
1916 Female, age 42, unknown 4.1
2590 Female, age 75, unknown 4.1
2699 Male, age 18, unknown 4.1
Superior colliculus
nTPM: 4.2
1895 Male, age 76, right hemisphere 4.4
2668 Female, age 75, unknown 4.3
1839 Male, age 51, unknown 4.2
2087 Female, age 72, unknown 4.2
2587 Male, age 74, left hemisphere 4.2
2664 Male, age 75, both hemispheres 4.2
1796 Male, age 53, unknown 4.1
1913 Female, age 42, unknown 4.1
2261 Male, age 18, unknown 4.1
1995 Male, age 72, unknown 4.0
Ventral tegmental area
nTPM: 4.2
2021 Male, age 53, unknown 4.5
2218 Male, age 76, both hemispheres 4.2
2223 Female, age 72, unknown 4.2
1942 Male, age 51, unknown 4.1
2410 Female, age 72, unknown 4.1
1915 Female, age 42, unknown 4.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 83.8
Min nTPM: 14.6
Std nTPM: 12.7
Median nTPM: 31.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 83.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 76.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 70.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 59.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 58.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 58.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 54.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 54.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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