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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA:25.7 nTPM
GTEx:11.7 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:30.5 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.3
2481 Female, age 94, left hemisphere 15.0
2289 Male, age 61, right hemisphere 13.9
1781 Male, age 74, unknown 13.2
2290 Female, age 72, unknown 12.0
2288 Male, age 75, left hemisphere 11.9
1854 Male, age 80, left hemisphere 11.1
1857 Female, age 85, left hemisphere 10.8
2846 Female, age 79, unknown 10.6
Claustrum
nTPM: 14.2
2645 Female, age 72, unknown 16.5
2491 Male, age 75, both hemispheres 14.8
2568 Male, age 61, both hemispheres 14.7
1956 Male, age 74, unknown 14.3
2284 Female, age 91, both hemispheres 14.3
2292 Female, age 85, both hemispheres 13.7
2196 Female, age 79, unknown 13.6
2198 Male, age 80, both hemispheres 13.4
2392 Female, age 94, both hemispheres 12.7
Globus pallidus, externus
nTPM: 14.8
2646 Male, age 61, right hemisphere 15.9
2395 Male, age 75, both hemispheres 14.9
2567 Female, age 72, unknown 14.7
1996 Male, age 80, right hemisphere 14.6
2772 Female, age 79, unknown 13.9
Globus pallidus, internus
nTPM: 14.6
2483 Female, age 94, right hemisphere 17.1
1818 Male, age 74, unknown 16.2
2037 Male, age 80, right hemisphere 14.2
2566 Female, age 72, unknown 14.2
2778 Female, age 91, both hemispheres 14.0
2287 Male, age 75, right hemisphere 13.5
2111 Female, age 85, right hemisphere 13.3
Nucleus accumbens
nTPM: 12.0
2732 Male, age 80, right hemisphere 14.8
2391 Female, age 94, left hemisphere 12.8
2286 Male, age 75, left hemisphere 12.1
2698 Female, age 72, unknown 11.8
1806 Female, age 85, left hemisphere 11.2
1783 Male, age 74, unknown 11.1
2824 Male, age 61, right hemisphere 11.0
1856 Female, age 91, right hemisphere 10.8
Nucleus basalis of Meynert
nTPM: 13.3
2569 Male, age 61, both hemispheres 16.2
2484 Female, age 94, left hemisphere 13.6
2821 Male, age 75, both hemispheres 12.2
2393 Male, age 80, right hemisphere 11.4
Nucleus of the diagonal band
nTPM: 25.7
2195 Female, age 85, both hemispheres 33.1
2775 Male, age 80, right hemisphere 29.8
2029 Male, age 61, right hemisphere 25.1
1812 Female, age 91, both hemispheres 22.2
1979 Male, age 74, unknown 18.3
Olfactory tubercle
nTPM: 22.0
2487 Female, age 94, left hemisphere 24.4
1846 Male, age 80, right hemisphere 23.9
1998 Female, age 91, both hemispheres 20.6
2856 Male, age 75, right hemisphere 19.1
Putamen
nTPM: 11.7
2482 Female, age 94, left hemisphere 13.7
2647 Male, age 75, left hemisphere 12.9
2489 Female, age 72, unknown 11.9
2466 Female, age 79, unknown 11.0
1829 Male, age 74, unknown 10.9
1937 Female, age 91, right hemisphere 10.9
1838 Male, age 80, right hemisphere 10.3
Septal nuclei
nTPM: 24.7
1960 Male, age 74, unknown 37.3
2059 Female, age 85, both hemispheres 27.2
2031 Female, age 72, unknown 26.3
2009 Female, age 91, both hemispheres 22.9
2629 Female, age 94, right hemisphere 21.9
2199 Male, age 80, right hemisphere 19.0
2394 Male, age 61, left hemisphere 18.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 24.8
Min nTPM: 4.1
Std nTPM: 3.8
Median nTPM: 11.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 24.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 21.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 21.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 21.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 20.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 20.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 19.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 19.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 40.2
Min nTPM: 3.5
Std nTPM: 4.5
Median nTPM: 10.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 40.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 28.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 23.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 23.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 22.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 22.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 22.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 22.0
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 21.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 21.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 21.2
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Brain - Putamen (basal ganglia)
Average nTPM: 9.7
Samples: 205

Max nTPM: 23.4
Min nTPM: 3.1
Std nTPM: 3.4
Median nTPM: 9.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 23.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 22.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 18.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 17.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 17.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 17.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 17.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 16.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 16.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 16.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 16.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.1
FF:10164-103B2 76 years, female 9.1
Globus pallidus
Scaled Tags Per Million: 7.9
FF:10161-103A8 76 years, female 9.5
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 13.3
FF:10037-101F1 23-56 years, mixed 13.3
Putamen
Scaled Tags Per Million: 7.1
FF:10176-103C5 60 years, female 7.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.0
Sample A Female 6.3
Sample B Female 7.4
Sample C Male 6.2
Sample D Male 5.0
Putamen
nTPM: 7.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 5.5
Sample A Female 12.7
Sample B Female 5.7
Sample C Male 5.5
Sample D Male 7.1
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 9.8
Sample C Male 14.0
Sample D Male 11.8
Ventral pallidum
nTPM: 11.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 6.9
Sample A Female 7.1
Sample B Female 6.9
Sample C Male 20.1
Sample D Male 10.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.4
Samples: 4

Max nTPM: 20.9
Min nTPM: 5.8
Sample A Male 6.9
Sample B Male 5.8
Sample C Female 20.9
Sample D Female 16.0
Septum
nTPM: 21.2
Samples: 4

Max nTPM: 34.0
Min nTPM: 11.6
Sample A Male 34.0
Sample B Male 15.3
Sample C Female 23.9
Sample D Female 11.6
Ventral forebrain
nTPM: 30.5
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.7
Sample A Male 31.0
Sample B Male 24.7
Sample C Female 28.4
Sample D Female 37.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
71281009 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 1.3
73616035 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 2.5
71281009 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 2.5
73616035 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.