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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.6 nTPM
HPA:28.6 nTPM
GTEx:19.2 nTPM
FANTOM5:6.4 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:20.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
2219 Male, age 76, both hemispheres 24.1
2586 Male, age 75, left hemisphere 21.5
2828 Female, age 72, unknown 17.7
1833 Male, age 53, unknown 17.3
1870 Female, age 42, unknown 15.8
1827 Male, age 72, unknown 15.6
2411 Female, age 72, unknown 15.5
2666 Male, age 74, left hemisphere 14.3
1830 Male, age 51, unknown 13.9
2019 Male, age 18, unknown 8.6
Dorsal raphe nucleus
nTPM: 18.8
2016 Female, age 72, unknown 22.8
1828 Male, age 53, unknown 20.3
2298 Female, age 72, unknown 18.8
2047 Male, age 72, unknown 17.1
2750 Male, age 76, both hemispheres 14.8
Inferior colliculus
nTPM: 14.7
2849 Male, age 72, unknown 17.0
1890 Male, age 53, unknown 15.2
1848 Female, age 42, unknown 13.8
2097 Female, age 72, unknown 12.7
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Pedunculopontine tegmental nucleus
nTPM: 15.3
2338 Male, age 61, both hemispheres 16.2
1921 Female, age 85, both hemispheres 15.2
2334 Male, age 80, both hemispheres 14.5
Periaquaductal grey, anterior
nTPM: 20.4
1795 Male, age 51, unknown 24.8
2502 Female, age 75, unknown 19.4
1947 Male, age 18, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 22.9
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 26.0
1831 Male, age 72, unknown 20.2
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 26.0
2053 Male, age 18, unknown 29.1
2140 Male, age 76, both hemispheres 27.0
2272 Male, age 74, both hemispheres 22.1
Pretectal area
nTPM: 18.9
2825 Male, age 18, unknown 24.6
2667 Female, age 75, unknown 23.6
2224 Female, age 72, unknown 21.9
2273 Male, age 74, both hemispheres 21.6
2407 Male, age 75, both hemispheres 20.9
1944 Female, age 72, unknown 18.0
2316 Male, age 76, right hemisphere 17.6
1816 Male, age 51, unknown 17.2
1815 Male, age 53, unknown 17.0
2007 Male, age 72, unknown 15.1
1817 Female, age 42, unknown 10.7
Red nucleus
nTPM: 13.0
2725 Female, age 75, unknown 16.4
2584 Male, age 75, left hemisphere 15.9
2823 Male, age 76, right hemisphere 13.9
2227 Male, age 72, unknown 13.6
2588 Male, age 74, left hemisphere 13.6
2503 Female, age 72, unknown 13.3
2769 Male, age 72, unknown 12.8
1904 Male, age 53, unknown 12.5
1954 Female, age 42, unknown 11.9
1821 Female, age 72, unknown 11.8
1865 Male, age 51, unknown 10.9
2785 Male, age 18, unknown 8.7
Substantia nigra
nTPM: 28.6
2699 Male, age 18, unknown 45.4
1916 Female, age 42, unknown 41.6
2241 Male, age 72, unknown 38.6
1851 Male, age 51, unknown 31.8
2665 Male, age 74, both hemispheres 27.0
2409 Female, age 72, unknown 25.9
1941 Male, age 53, unknown 20.3
2583 Male, age 75, right hemisphere 18.5
2590 Female, age 75, unknown 18.5
1889 Female, age 72, unknown 18.2
Superior colliculus
nTPM: 16.7
2261 Male, age 18, unknown 26.5
2664 Male, age 75, both hemispheres 23.8
1796 Male, age 53, unknown 17.4
2087 Female, age 72, unknown 15.8
2587 Male, age 74, left hemisphere 15.5
1839 Male, age 51, unknown 14.8
2668 Female, age 75, unknown 14.2
1995 Male, age 72, unknown 13.4
1895 Male, age 76, right hemisphere 13.1
1913 Female, age 42, unknown 12.5
Ventral tegmental area
nTPM: 26.8
1915 Female, age 42, unknown 35.6
2218 Male, age 76, both hemispheres 30.2
1942 Male, age 51, unknown 29.2
2410 Female, age 72, unknown 25.1
2021 Male, age 53, unknown 21.6
2223 Female, age 72, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 45.9
Min nTPM: 3.0
Std nTPM: 9.3
Median nTPM: 17.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 45.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 45.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 39.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 38.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 36.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 35.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 34.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 34.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.4
FF:10158-103A5 76 years, female 6.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 9.1
Sample A Female 9.4
Sample B Female 17.3
Sample C Male 24.5
Sample D Male 9.1
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 15.6
Min nTPM: 10.2
Sample B Female 15.6
Sample C Male 14.9
Sample D Male 10.2
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 24.5
Min nTPM: 11.8
Sample A Female 21.7
Sample B Female 12.3
Sample C Male 24.5
Sample D Male 11.8
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 4.0
Sample A Female 9.6
Sample B Female 4.0
Sample C Male 9.8
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 20.5
Sample C Female 20.8
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
71281009 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 2.2
73616035 Antisense, RP_050818_02_A05, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.