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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		123.849
RNA expressioni
Consensus:48.1 nTPM
HPA:48.1 nTPM
GTEx:59.0 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:81.3 nTPM
Mouse:110.8 nTPM
Allen mouse:14.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017960
Glial cells High
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA017960
Hippocampal formation mean intensity 123.849
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 51.479
Molecular layer of the dentate gyrus 84.072
Granular dentate gyrus 76.388
CA1 - oriens layer 47.815
CA1 - pyramidal layer 79.257
CA1 - radiatum layer 70.044
CA2 - oriens layer 72.414
CA2 - pyramidal layer 77.820
CA2 - radiatum layer 84.481
CA3 - oriens layer 92.195
CA3 - pyramidal layer 92.520
CA3 - radiatum layer 123.849
Stratum lucidum 69.438
Lacunosum moleculare 79.444
Subiculum 68.084

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Hippocampus
nTPM: 47.6
1855 Male, age 76, left hemisphere 54.8
2621 Female, age 67, right hemisphere 53.9
1898 Male, age 80, left hemisphere 51.5
1911 Female, age 85, right hemisphere 43.9
2148 Female, age 91, left hemisphere 41.9
2529 Female, age 94, left hemisphere 39.3
Dentate gyrus
nTPM: 47.8
2530 Female, age 94, left hemisphere 59.6
2010 Male, age 76, both hemispheres 55.0
2246 Female, age 85, both hemispheres 46.5
2531 Female, age 67, both hemispheres 43.3
2528 Male, age 74, both hemispheres 42.5
1927 Female, age 91, both hemispheres 39.9
Entorhinal gyrus
nTPM: 46.6
2613 Female, age 94, left hemisphere 56.2
2764 Male, age 80, right hemisphere 50.6
1938 Female, age 85, left hemisphere 47.3
1787 Male, age 76, left hemisphere 46.4
2686 Male, age 75, right hemisphere 40.2
2117 Female, age 91, right hemisphere 38.7
Hippocampus, CA1
nTPM: 47.6
2749 Male, age 80, left hemisphere 63.6
1873 Female, age 85, both hemispheres 50.9
2527 Male, age 74, both hemispheres 46.4
2082 Female, age 91, right hemisphere 39.8
2045 Male, age 76, both hemispheres 37.5
Hippocampus, CA2
nTPM: 48.1
1963 Male, age 80, left hemisphere 50.9
2249 Male, age 74, both hemispheres 50.7
1940 Female, age 85, left hemisphere 49.6
1892 Male, age 76, both hemispheres 49.5
2437 Female, age 94, left hemisphere 49.0
2113 Female, age 91, right hemisphere 38.8
Hippocampus, CA3
nTPM: 45.1
2137 Male, age 80, left hemisphere 52.7
2861 Female, age 67, both hemispheres 48.2
2620 Female, age 94, left hemisphere 45.1
1867 Male, age 76, both hemispheres 41.8
2436 Male, age 74, both hemispheres 41.7
1891 Female, age 85, both hemispheres 41.1
Parahippocampal cortex
nTPM: 46.3
2532 Female, age 72, left hemisphere 55.8
1850 Male, age 80, both hemispheres 49.1
2622 Female, age 67, right hemisphere 48.1
2693 Female, age 94, both hemispheres 47.8
2245 Female, age 91, both hemispheres 45.7
1933 Female, age 85, both hemispheres 45.0
2692 Male, age 74, both hemispheres 44.9
2018 Male, age 76, both hemispheres 43.8
2250 Female, age 67, right hemisphere 42.1
1990 Female, age 91, right hemisphere 40.9
Perirhinal gyrus
nTPM: 46.6
1794 Male, age 80, right hemisphere 49.7
1841 Female, age 85, right hemisphere 47.9
2521 Female, age 94, right hemisphere 46.0
1847 Female, age 91, left hemisphere 45.0
2848 Male, age 76, right hemisphere 44.3
Subiculum
nTPM: 44.5
2438 Female, age 94, left hemisphere 50.7
1901 Male, age 80, both hemispheres 48.8
2042 Male, age 76, both hemispheres 47.9
1977 Female, age 85, both hemispheres 41.7
2619 Male, age 74, both hemispheres 41.7
2729 Female, age 91, right hemisphere 36.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.0
Samples: 197

Max nTPM: 126.8
Min nTPM: 15.2
Std nTPM: 17.3
Median nTPM: 57.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 126.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 108.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 100.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 98.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 97.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 95.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 92.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 91.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 89.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 87.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 87.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 119.4
FF:10169-103B7 60 years, female 157.9
FF:10153-102I9 76 years, female 80.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 81.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 81.3
Samples: 4

Max nTPM: 100.0
Min nTPM: 61.5
Sample A Female 100.0
Sample B Female 87.4
Sample C Male 76.2
Sample D Male 61.5
Entorhinal cortex
nTPM: 60.8
Samples: 4

Max nTPM: 66.3
Min nTPM: 55.7
Sample A Female 66.3
Sample B Female 63.2
Sample C Male 55.7
Sample D Male 57.8
Subiculum
nTPM: 50.4
Samples: 4

Max nTPM: 57.8
Min nTPM: 43.6
Sample A Female 57.8
Sample B Female 45.6
Sample C Male 54.7
Sample D Male 43.6
Ventral hippocampus
nTPM: 76.1
Samples: 4

Max nTPM: 90.3
Min nTPM: 48.3
Sample A Female 77.0
Sample B Female 48.3
Sample C Male 88.9
Sample D Male 90.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 110.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 83.4
Samples: 4

Max nTPM: 93.2
Min nTPM: 75.5
Sample A Male 83.2
Sample B Male 75.5
Sample C Female 81.8
Sample D Female 93.2
Hippocampal formation
nTPM: 110.8
Samples: 4

Max nTPM: 124.4
Min nTPM: 90.2
Sample A Male 90.2
Sample B Male 120.0
Sample C Female 124.4
Sample D Female 108.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.8
68845275 Antisense, RP_050224_01_E01, Mouse strain C57BL/6J (56 days, male) 17.1
72077454 Antisense, RP_051017_03_A08, Mouse strain C57BL/6J (56 days, male) 12.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.