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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:52.5 nTPM
FANTOM5:144.0 Scaled Tags Per Million
Pig:100.3 nTPM
Mouse:44.6 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2019 Male, age 18, unknown 73.5
2586 Male, age 75, left hemisphere 67.7
1833 Male, age 53, unknown 54.9
1830 Male, age 51, unknown 54.2
1870 Female, age 42, unknown 53.1
2411 Female, age 72, unknown 52.4
2666 Male, age 74, left hemisphere 52.3
2828 Female, age 72, unknown 48.9
2219 Male, age 76, both hemispheres 46.1
1827 Male, age 72, unknown 44.7
Dorsal raphe nucleus
nTPM: 45.4
2750 Male, age 76, both hemispheres 52.5
1828 Male, age 53, unknown 49.9
2016 Female, age 72, unknown 44.8
2047 Male, age 72, unknown 41.1
2298 Female, age 72, unknown 38.9
Inferior colliculus
nTPM: 44.4
1890 Male, age 53, unknown 49.9
1848 Female, age 42, unknown 45.4
2849 Male, age 72, unknown 43.1
2097 Female, age 72, unknown 39.1
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 42.6
2334 Male, age 80, both hemispheres 44.4
1921 Female, age 85, both hemispheres 43.8
2338 Male, age 61, both hemispheres 39.7
Periaquaductal grey, anterior
nTPM: 48.8
2502 Female, age 75, unknown 54.4
1795 Male, age 51, unknown 48.5
1947 Male, age 18, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 43.5
2850 Male, age 76, both hemispheres 50.1
1831 Male, age 72, unknown 43.5
2464 Female, age 72, unknown 42.6
1840 Male, age 53, unknown 37.7
Periaquaductal grey, lateral
nTPM: 48.1
2272 Male, age 74, both hemispheres 53.9
2140 Male, age 76, both hemispheres 48.4
2053 Male, age 18, unknown 42.0
Pretectal area
nTPM: 52.7
2007 Male, age 72, unknown 64.3
1817 Female, age 42, unknown 58.8
1944 Female, age 72, unknown 58.7
1815 Male, age 53, unknown 58.6
1816 Male, age 51, unknown 57.4
2407 Male, age 75, both hemispheres 57.4
2667 Female, age 75, unknown 51.5
2273 Male, age 74, both hemispheres 49.0
2316 Male, age 76, right hemisphere 44.3
2825 Male, age 18, unknown 42.6
2224 Female, age 72, unknown 37.0
Red nucleus
nTPM: 62.7
2785 Male, age 18, unknown 77.3
1865 Male, age 51, unknown 66.4
1904 Male, age 53, unknown 65.7
2588 Male, age 74, left hemisphere 65.4
2769 Male, age 72, unknown 64.3
2584 Male, age 75, left hemisphere 63.7
2227 Male, age 72, unknown 63.3
2823 Male, age 76, right hemisphere 63.1
1821 Female, age 72, unknown 57.7
1954 Female, age 42, unknown 57.6
2503 Female, age 72, unknown 56.6
2725 Female, age 75, unknown 50.8
Substantia nigra
nTPM: 46.5
2583 Male, age 75, right hemisphere 61.8
1889 Female, age 72, unknown 52.9
1851 Male, age 51, unknown 46.7
2590 Female, age 75, unknown 46.1
2409 Female, age 72, unknown 45.0
2699 Male, age 18, unknown 44.7
1941 Male, age 53, unknown 44.1
1916 Female, age 42, unknown 44.0
2241 Male, age 72, unknown 40.9
2665 Male, age 74, both hemispheres 38.7
Superior colliculus
nTPM: 52.5
1995 Male, age 72, unknown 62.1
1913 Female, age 42, unknown 61.3
2668 Female, age 75, unknown 57.2
2087 Female, age 72, unknown 53.7
2261 Male, age 18, unknown 50.8
2587 Male, age 74, left hemisphere 50.3
2664 Male, age 75, both hemispheres 50.3
1839 Male, age 51, unknown 46.6
1895 Male, age 76, right hemisphere 46.6
1796 Male, age 53, unknown 46.4
Ventral tegmental area
nTPM: 48.2
2223 Female, age 72, unknown 57.8
2410 Female, age 72, unknown 55.0
2218 Male, age 76, both hemispheres 48.0
1942 Male, age 51, unknown 44.9
2021 Male, age 53, unknown 43.0
1915 Female, age 42, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.5
Samples: 139

Max nTPM: 155.8
Min nTPM: 20.1
Std nTPM: 18.5
Median nTPM: 50.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 155.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 153.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 96.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 93.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 91.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 90.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 82.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 76.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 75.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 72.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.0
FF:10158-103A5 76 years, female 144.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.3
Pig sample Sample description nTPM
Midbrain
nTPM: 100.3
Samples: 4

Max nTPM: 170.0
Min nTPM: 59.3
Sample A Female 170.0
Sample B Female 59.3
Sample C Male 105.0
Sample D Male 66.8
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 56.9
Min nTPM: 45.9
Sample B Female 56.9
Sample C Male 45.9
Sample D Male 52.5
Substantia nigra
nTPM: 72.1
Samples: 4

Max nTPM: 106.2
Min nTPM: 44.6
Sample A Female 72.3
Sample B Female 44.6
Sample C Male 65.3
Sample D Male 106.2
Superior colliculi
nTPM: 81.3
Samples: 4

Max nTPM: 109.7
Min nTPM: 45.4
Sample A Female 73.2
Sample B Female 45.4
Sample C Male 109.7
Sample D Male 96.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 46.2
Min nTPM: 42.9
Sample A Male 42.9
Sample B Male 44.7
Sample C Female 44.4
Sample D Female 46.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
68845275 Antisense, RP_050224_01_E01, Mouse strain C57BL/6J (56 days, male) 7.0
72077454 Antisense, RP_051017_03_A08, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.