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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA:15.4 nTPM
GTEx:24.4 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:35.9 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
1833 Male, age 53, unknown 14.8
1870 Female, age 42, unknown 14.8
1830 Male, age 51, unknown 13.8
2828 Female, age 72, unknown 13.5
2666 Male, age 74, left hemisphere 13.4
2019 Male, age 18, unknown 13.1
2411 Female, age 72, unknown 12.9
1827 Male, age 72, unknown 12.0
2219 Male, age 76, both hemispheres 12.0
2586 Male, age 75, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 13.5
2750 Male, age 76, both hemispheres 15.1
2298 Female, age 72, unknown 14.1
1828 Male, age 53, unknown 14.0
2016 Female, age 72, unknown 12.2
2047 Male, age 72, unknown 12.0
Inferior colliculus
nTPM: 12.7
1890 Male, age 53, unknown 14.1
1848 Female, age 42, unknown 12.6
2097 Female, age 72, unknown 12.5
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Pedunculopontine tegmental nucleus
nTPM: 13.3
2338 Male, age 61, both hemispheres 14.7
2334 Male, age 80, both hemispheres 13.0
1921 Female, age 85, both hemispheres 12.2
Periaquaductal grey, anterior
nTPM: 14.7
2502 Female, age 75, unknown 16.4
1947 Male, age 18, unknown 14.5
1795 Male, age 51, unknown 13.2
Periaquaductal grey, dorsal
nTPM: 11.8
2464 Female, age 72, unknown 13.8
2850 Male, age 76, both hemispheres 11.4
1840 Male, age 53, unknown 11.1
1831 Male, age 72, unknown 11.0
Periaquaductal grey, lateral
nTPM: 12.3
2272 Male, age 74, both hemispheres 13.3
2053 Male, age 18, unknown 12.4
2140 Male, age 76, both hemispheres 11.2
Pretectal area
nTPM: 12.3
2007 Male, age 72, unknown 13.8
1816 Male, age 51, unknown 13.0
2224 Female, age 72, unknown 12.7
1817 Female, age 42, unknown 12.6
1815 Male, age 53, unknown 12.3
1944 Female, age 72, unknown 12.3
2273 Male, age 74, both hemispheres 12.3
2316 Male, age 76, right hemisphere 12.1
2825 Male, age 18, unknown 12.1
2667 Female, age 75, unknown 11.8
2407 Male, age 75, both hemispheres 10.6
Red nucleus
nTPM: 15.4
1821 Female, age 72, unknown 19.0
2769 Male, age 72, unknown 18.3
1904 Male, age 53, unknown 18.2
2227 Male, age 72, unknown 16.3
1954 Female, age 42, unknown 15.8
2823 Male, age 76, right hemisphere 14.7
2588 Male, age 74, left hemisphere 14.6
2725 Female, age 75, unknown 14.5
2785 Male, age 18, unknown 13.8
1865 Male, age 51, unknown 13.4
2503 Female, age 72, unknown 13.4
2584 Male, age 75, left hemisphere 12.5
Substantia nigra
nTPM: 13.8
2665 Male, age 74, both hemispheres 21.4
2699 Male, age 18, unknown 14.9
1851 Male, age 51, unknown 13.7
2241 Male, age 72, unknown 13.4
2409 Female, age 72, unknown 13.3
1889 Female, age 72, unknown 13.2
1916 Female, age 42, unknown 13.0
2590 Female, age 75, unknown 13.0
2583 Male, age 75, right hemisphere 10.9
1941 Male, age 53, unknown 10.7
Superior colliculus
nTPM: 12.2
2587 Male, age 74, left hemisphere 14.0
1913 Female, age 42, unknown 13.3
1796 Male, age 53, unknown 12.3
1839 Male, age 51, unknown 12.3
1995 Male, age 72, unknown 12.3
2087 Female, age 72, unknown 12.2
1895 Male, age 76, right hemisphere 12.1
2668 Female, age 75, unknown 12.0
2261 Male, age 18, unknown 11.8
2664 Male, age 75, both hemispheres 9.9
Ventral tegmental area
nTPM: 13.0
2223 Female, age 72, unknown 14.1
1942 Male, age 51, unknown 13.5
2218 Male, age 76, both hemispheres 13.1
1915 Female, age 42, unknown 13.0
2410 Female, age 72, unknown 12.9
2021 Male, age 53, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 82.5
Min nTPM: 5.3
Std nTPM: 12.6
Median nTPM: 21.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 82.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 66.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 65.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 59.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 58.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 52.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 51.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 50.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 48.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 41.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.2
FF:10158-103A5 76 years, female 14.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 13.0
Sample A Female 51.6
Sample B Female 15.8
Sample C Male 20.7
Sample D Male 13.0
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 12.6
Min nTPM: 8.6
Sample B Female 12.6
Sample C Male 10.6
Sample D Male 8.6
Substantia nigra
nTPM: 22.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 17.9
Sample A Female 22.9
Sample B Female 26.3
Sample C Male 17.9
Sample D Male 24.3
Superior colliculi
nTPM: 27.9
Samples: 4

Max nTPM: 34.4
Min nTPM: 21.5
Sample A Female 30.4
Sample B Female 34.4
Sample C Male 25.4
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 38.3
Min nTPM: 32.6
Sample A Male 35.5
Sample B Male 32.6
Sample C Female 37.4
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70439075 Antisense, RP_050614_03_A10, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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