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EMC2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:78.8 nTPM
FANTOM5:211.0 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:107.6 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.0
2411 Female, age 72, unknown 19.7
1870 Female, age 42, unknown 19.6
1830 Male, age 51, unknown 19.5
1833 Male, age 53, unknown 19.4
2586 Male, age 75, left hemisphere 19.4
2666 Male, age 74, left hemisphere 19.2
2019 Male, age 18, unknown 18.9
1827 Male, age 72, unknown 18.4
2828 Female, age 72, unknown 18.2
2219 Male, age 76, both hemispheres 18.0
Dorsal raphe nucleus
nTPM: 19.1
2016 Female, age 72, unknown 20.2
1828 Male, age 53, unknown 20.1
2750 Male, age 76, both hemispheres 19.5
2298 Female, age 72, unknown 18.1
2047 Male, age 72, unknown 17.8
Inferior colliculus
nTPM: 19.3
2097 Female, age 72, unknown 19.9
1890 Male, age 53, unknown 19.6
2849 Male, age 72, unknown 19.4
1848 Female, age 42, unknown 18.4
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Pedunculopontine tegmental nucleus
nTPM: 18.1
1921 Female, age 85, both hemispheres 19.1
2334 Male, age 80, both hemispheres 18.7
2338 Male, age 61, both hemispheres 16.6
Periaquaductal grey, anterior
nTPM: 20.2
2502 Female, age 75, unknown 21.2
1947 Male, age 18, unknown 21.0
1795 Male, age 51, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 18.9
2464 Female, age 72, unknown 19.6
1831 Male, age 72, unknown 19.1
2850 Male, age 76, both hemispheres 18.8
1840 Male, age 53, unknown 18.1
Periaquaductal grey, lateral
nTPM: 18.6
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 18.7
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 20.0
2273 Male, age 74, both hemispheres 21.6
2316 Male, age 76, right hemisphere 21.5
2407 Male, age 75, both hemispheres 21.5
2667 Female, age 75, unknown 20.5
1944 Female, age 72, unknown 20.3
1816 Male, age 51, unknown 19.8
1817 Female, age 42, unknown 19.4
1815 Male, age 53, unknown 19.2
2825 Male, age 18, unknown 19.0
2224 Female, age 72, unknown 18.9
2007 Male, age 72, unknown 18.3
Red nucleus
nTPM: 19.9
1954 Female, age 42, unknown 21.5
1821 Female, age 72, unknown 21.4
2503 Female, age 72, unknown 21.0
2823 Male, age 76, right hemisphere 21.0
1904 Male, age 53, unknown 20.8
1865 Male, age 51, unknown 20.5
2588 Male, age 74, left hemisphere 19.2
2769 Male, age 72, unknown 19.1
2227 Male, age 72, unknown 18.8
2785 Male, age 18, unknown 18.7
2725 Female, age 75, unknown 18.6
2584 Male, age 75, left hemisphere 18.0
Substantia nigra
nTPM: 19.4
2241 Male, age 72, unknown 23.0
1941 Male, age 53, unknown 20.2
1851 Male, age 51, unknown 20.1
1916 Female, age 42, unknown 19.8
2699 Male, age 18, unknown 19.3
1889 Female, age 72, unknown 18.7
2583 Male, age 75, right hemisphere 18.5
2590 Female, age 75, unknown 18.5
2409 Female, age 72, unknown 18.1
2665 Male, age 74, both hemispheres 18.0
Superior colliculus
nTPM: 20.1
1995 Male, age 72, unknown 22.6
1913 Female, age 42, unknown 22.2
2668 Female, age 75, unknown 20.5
1839 Male, age 51, unknown 20.3
2664 Male, age 75, both hemispheres 20.3
2261 Male, age 18, unknown 20.1
1895 Male, age 76, right hemisphere 19.4
2587 Male, age 74, left hemisphere 18.9
2087 Female, age 72, unknown 18.5
1796 Male, age 53, unknown 17.8
Ventral tegmental area
nTPM: 18.8
2410 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 19.2
2223 Female, age 72, unknown 18.7
1915 Female, age 42, unknown 18.6
1942 Male, age 51, unknown 18.5
2218 Male, age 76, both hemispheres 18.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.8
Samples: 139

Max nTPM: 141.9
Min nTPM: 44.6
Std nTPM: 18.2
Median nTPM: 74.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 141.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 131.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 122.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 118.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 115.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 110.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 109.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 109.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 109.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 108.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 105.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.0
FF:10158-103A5 76 years, female 211.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.1
Pig sample Sample description nTPM
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 49.2
Min nTPM: 42.6
Sample A Female 49.2
Sample B Female 45.9
Sample C Male 42.6
Sample D Male 42.6
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 46.1
Min nTPM: 41.9
Sample B Female 43.3
Sample C Male 41.9
Sample D Male 46.1
Substantia nigra
nTPM: 44.0
Samples: 4

Max nTPM: 48.8
Min nTPM: 37.8
Sample A Female 48.4
Sample B Female 40.9
Sample C Male 48.8
Sample D Male 37.8
Superior colliculi
nTPM: 39.5
Samples: 4

Max nTPM: 42.7
Min nTPM: 33.2
Sample A Female 39.6
Sample B Female 33.2
Sample C Male 42.3
Sample D Male 42.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.6
Samples: 4

Max nTPM: 113.0
Min nTPM: 103.8
Sample A Male 103.8
Sample B Male 106.9
Sample C Female 106.8
Sample D Female 113.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
81599618 Antisense, RP_071127_04_D06, Mouse strain C57BL/6J (56 days, male) 3.1
513494 Antisense, RP_040810_02_A04, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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