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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:52.4 nTPM
HPA:52.4 nTPM
GTEx:48.2 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:119.0 nTPM
Mouse:474.4 nTPM
Allen mouse:20.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043245
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 52.4
Sample id Sample description nTPM
Hippocampus
nTPM: 13.2
1898 Male, age 80, left hemisphere 49.4
2621 Female, age 67, right hemisphere 19.9
1911 Female, age 85, right hemisphere 4.9
1855 Male, age 76, left hemisphere 3.7
2148 Female, age 91, left hemisphere 1.7
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 17.3
1927 Female, age 91, both hemispheres 61.3
2010 Male, age 76, both hemispheres 18.7
2530 Female, age 94, left hemisphere 14.9
2246 Female, age 85, both hemispheres 9.2
2528 Male, age 74, both hemispheres 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 35.9
1938 Female, age 85, left hemisphere 71.6
1787 Male, age 76, left hemisphere 45.9
2764 Male, age 80, right hemisphere 44.4
2613 Female, age 94, left hemisphere 40.6
2686 Male, age 75, right hemisphere 12.9
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 15.8
1873 Female, age 85, both hemispheres 44.8
2749 Male, age 80, left hemisphere 34.4
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 40.2
1892 Male, age 76, both hemispheres 119.7
1963 Male, age 80, left hemisphere 76.7
2437 Female, age 94, left hemisphere 30.6
1940 Female, age 85, left hemisphere 14.6
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 14.1
1867 Male, age 76, both hemispheres 36.0
1891 Female, age 85, both hemispheres 29.8
2137 Male, age 80, left hemisphere 10.5
2861 Female, age 67, both hemispheres 8.2
2436 Male, age 74, both hemispheres 0.0
2620 Female, age 94, left hemisphere 0.0
Parahippocampal cortex
nTPM: 29.9
1990 Female, age 91, right hemisphere 63.4
1850 Male, age 80, both hemispheres 62.4
1933 Female, age 85, both hemispheres 30.1
2250 Female, age 67, right hemisphere 29.4
2532 Female, age 72, left hemisphere 28.7
2693 Female, age 94, both hemispheres 25.9
2622 Female, age 67, right hemisphere 22.3
2245 Female, age 91, both hemispheres 20.3
2692 Male, age 74, both hemispheres 14.9
2018 Male, age 76, both hemispheres 2.0
Perirhinal gyrus
nTPM: 52.4
1847 Female, age 91, left hemisphere 91.5
1841 Female, age 85, right hemisphere 55.4
1794 Male, age 80, right hemisphere 49.1
2521 Female, age 94, right hemisphere 36.6
2848 Male, age 76, right hemisphere 29.2
Subiculum
nTPM: 22.0
1977 Female, age 85, both hemispheres 48.2
1901 Male, age 80, both hemispheres 38.0
2438 Female, age 94, left hemisphere 28.3
2619 Male, age 74, both hemispheres 13.7
2042 Male, age 76, both hemispheres 4.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.2
Samples: 197

Max nTPM: 195.4
Min nTPM: 5.7
Std nTPM: 39.0
Median nTPM: 33.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 195.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 186.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 168.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 163.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 163.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 159.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 158.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 141.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 140.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 139.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 138.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.7
FF:10169-103B7 60 years, female 87.8
FF:10153-102I9 76 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 119.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 78.9
Samples: 4

Max nTPM: 87.9
Min nTPM: 68.9
Sample A Female 87.9
Sample B Female 75.8
Sample C Male 68.9
Sample D Male 83.1
Entorhinal cortex
nTPM: 100.9
Samples: 4

Max nTPM: 118.7
Min nTPM: 84.1
Sample A Female 101.4
Sample B Female 99.2
Sample C Male 118.7
Sample D Male 84.1
Subiculum
nTPM: 119.0
Samples: 4

Max nTPM: 132.9
Min nTPM: 99.2
Sample A Female 132.9
Sample B Female 132.6
Sample C Male 99.2
Sample D Male 111.1
Ventral hippocampus
nTPM: 62.9
Samples: 4

Max nTPM: 78.4
Min nTPM: 40.3
Sample A Female 64.8
Sample B Female 68.2
Sample C Male 78.4
Sample D Male 40.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 474.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 474.4
Samples: 4

Max nTPM: 539.3
Min nTPM: 431.4
Sample A Male 444.6
Sample B Male 482.2
Sample C Female 431.4
Sample D Female 539.3
Hippocampal formation
nTPM: 362.5
Samples: 4

Max nTPM: 435.1
Min nTPM: 316.6
Sample A Male 435.1
Sample B Male 332.6
Sample C Female 365.7
Sample D Female 316.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.4
70437798 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 20.4
71924321 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 16.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.