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R3HCC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:48.2 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:7.7 nTPM
Mouse:22.3 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.1
2411 Female, age 72, unknown 51.7
2019 Male, age 18, unknown 51.4
2586 Male, age 75, left hemisphere 49.4
1870 Female, age 42, unknown 48.7
1830 Male, age 51, unknown 47.0
1827 Male, age 72, unknown 46.4
2828 Female, age 72, unknown 45.6
2666 Male, age 74, left hemisphere 44.5
2219 Male, age 76, both hemispheres 43.0
1833 Male, age 53, unknown 42.9
Dorsal raphe nucleus
nTPM: 42.1
2750 Male, age 76, both hemispheres 52.9
1828 Male, age 53, unknown 41.2
2047 Male, age 72, unknown 39.8
2016 Female, age 72, unknown 39.5
2298 Female, age 72, unknown 37.4
Inferior colliculus
nTPM: 40.6
1890 Male, age 53, unknown 44.4
2097 Female, age 72, unknown 42.4
1848 Female, age 42, unknown 38.5
2849 Male, age 72, unknown 37.0
Median raphe nucleus
nTPM: 43.5
2220 Male, age 76, midline 43.5
Pedunculopontine tegmental nucleus
nTPM: 45.2
2334 Male, age 80, both hemispheres 47.3
2338 Male, age 61, both hemispheres 44.7
1921 Female, age 85, both hemispheres 43.6
Periaquaductal grey, anterior
nTPM: 40.9
2502 Female, age 75, unknown 43.4
1795 Male, age 51, unknown 40.5
1947 Male, age 18, unknown 38.7
Periaquaductal grey, dorsal
nTPM: 38.0
1831 Male, age 72, unknown 42.7
2464 Female, age 72, unknown 39.6
2850 Male, age 76, both hemispheres 35.4
1840 Male, age 53, unknown 34.3
Periaquaductal grey, lateral
nTPM: 38.6
2053 Male, age 18, unknown 40.8
2272 Male, age 74, both hemispheres 38.5
2140 Male, age 76, both hemispheres 36.5
Pretectal area
nTPM: 43.7
1944 Female, age 72, unknown 49.5
1816 Male, age 51, unknown 48.8
2007 Male, age 72, unknown 48.2
1815 Male, age 53, unknown 47.5
1817 Female, age 42, unknown 44.3
2407 Male, age 75, both hemispheres 44.1
2667 Female, age 75, unknown 43.4
2273 Male, age 74, both hemispheres 40.1
2825 Male, age 18, unknown 40.0
2316 Male, age 76, right hemisphere 39.4
2224 Female, age 72, unknown 35.8
Red nucleus
nTPM: 49.8
2588 Male, age 74, left hemisphere 52.8
2823 Male, age 76, right hemisphere 52.6
1865 Male, age 51, unknown 52.3
2584 Male, age 75, left hemisphere 52.1
2785 Male, age 18, unknown 51.8
2503 Female, age 72, unknown 50.5
1821 Female, age 72, unknown 48.8
1954 Female, age 42, unknown 48.6
2769 Male, age 72, unknown 47.8
2227 Male, age 72, unknown 47.7
1904 Male, age 53, unknown 47.5
2725 Female, age 75, unknown 45.5
Substantia nigra
nTPM: 43.8
1941 Male, age 53, unknown 48.2
2583 Male, age 75, right hemisphere 47.0
1916 Female, age 42, unknown 45.5
1889 Female, age 72, unknown 45.4
1851 Male, age 51, unknown 44.9
2665 Male, age 74, both hemispheres 42.4
2590 Female, age 75, unknown 42.0
2699 Male, age 18, unknown 41.4
2241 Male, age 72, unknown 40.7
2409 Female, age 72, unknown 40.3
Superior colliculus
nTPM: 45.7
1913 Female, age 42, unknown 51.9
1995 Male, age 72, unknown 48.4
2668 Female, age 75, unknown 48.0
2087 Female, age 72, unknown 47.5
2261 Male, age 18, unknown 46.0
2587 Male, age 74, left hemisphere 45.9
1796 Male, age 53, unknown 45.5
1895 Male, age 76, right hemisphere 42.1
2664 Male, age 75, both hemispheres 42.0
1839 Male, age 51, unknown 39.9
Ventral tegmental area
nTPM: 44.1
2223 Female, age 72, unknown 49.0
2410 Female, age 72, unknown 44.5
2218 Male, age 76, both hemispheres 43.6
2021 Male, age 53, unknown 42.8
1915 Female, age 42, unknown 42.7
1942 Male, age 51, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 95.3
Min nTPM: 25.6
Std nTPM: 13.9
Median nTPM: 45.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 85.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 81.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 77.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 74.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 69.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.7
FF:10158-103A5 76 years, female 45.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.7
Pig sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.1
Sample A Female 6.4
Sample B Female 5.1
Sample C Male 8.2
Sample D Male 6.1
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.8
Min nTPM: 3.7
Sample B Female 4.4
Sample C Male 5.8
Sample D Male 3.7
Substantia nigra
nTPM: 5.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 2.4
Sample A Female 7.8
Sample B Female 4.5
Sample C Male 6.3
Sample D Male 2.4
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.2
Sample A Female 10.9
Sample B Female 6.2
Sample C Male 7.4
Sample D Male 6.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.1
Min nTPM: 20.8
Sample A Male 23.1
Sample B Male 20.8
Sample C Female 23.0
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69353614 Antisense, RP_050412_02_D03, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.