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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:49.9 nTPM
HPA:49.9 nTPM
GTEx:55.7 nTPM
FANTOM5:140.0 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:29.0 nTPM
Allen mouse:8.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005468
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Hippocampus
nTPM: 48.9
1898 Male, age 80, left hemisphere 57.0
2621 Female, age 67, right hemisphere 49.8
2529 Female, age 94, left hemisphere 48.7
1911 Female, age 85, right hemisphere 47.1
1855 Male, age 76, left hemisphere 47.0
2148 Female, age 91, left hemisphere 43.7
Dentate gyrus
nTPM: 46.7
2010 Male, age 76, both hemispheres 51.1
1927 Female, age 91, both hemispheres 48.2
2530 Female, age 94, left hemisphere 47.3
2528 Male, age 74, both hemispheres 46.1
2246 Female, age 85, both hemispheres 44.7
2531 Female, age 67, both hemispheres 42.8
Entorhinal gyrus
nTPM: 46.1
2117 Female, age 91, right hemisphere 51.1
1787 Male, age 76, left hemisphere 49.3
2764 Male, age 80, right hemisphere 47.7
1938 Female, age 85, left hemisphere 45.3
2613 Female, age 94, left hemisphere 43.3
2686 Male, age 75, right hemisphere 39.7
Hippocampus, CA1
nTPM: 49.1
2749 Male, age 80, left hemisphere 57.4
2527 Male, age 74, both hemispheres 49.1
1873 Female, age 85, both hemispheres 47.2
2045 Male, age 76, both hemispheres 46.6
2082 Female, age 91, right hemisphere 45.3
Hippocampus, CA2
nTPM: 49.9
1892 Male, age 76, both hemispheres 56.6
1963 Male, age 80, left hemisphere 50.2
1940 Female, age 85, left hemisphere 49.8
2249 Male, age 74, both hemispheres 49.3
2437 Female, age 94, left hemisphere 48.9
2113 Female, age 91, right hemisphere 44.6
Hippocampus, CA3
nTPM: 47.5
1867 Male, age 76, both hemispheres 54.5
2137 Male, age 80, left hemisphere 52.7
2436 Male, age 74, both hemispheres 51.5
1891 Female, age 85, both hemispheres 48.4
2620 Female, age 94, left hemisphere 40.0
2861 Female, age 67, both hemispheres 38.2
Parahippocampal cortex
nTPM: 45.9
2018 Male, age 76, both hemispheres 49.7
1850 Male, age 80, both hemispheres 49.2
1990 Female, age 91, right hemisphere 47.8
1933 Female, age 85, both hemispheres 47.5
2250 Female, age 67, right hemisphere 47.4
2245 Female, age 91, both hemispheres 46.0
2693 Female, age 94, both hemispheres 44.8
2692 Male, age 74, both hemispheres 43.4
2532 Female, age 72, left hemisphere 42.8
2622 Female, age 67, right hemisphere 40.5
Perirhinal gyrus
nTPM: 47.5
1794 Male, age 80, right hemisphere 49.3
1847 Female, age 91, left hemisphere 49.2
2521 Female, age 94, right hemisphere 47.3
1841 Female, age 85, right hemisphere 47.0
2848 Male, age 76, right hemisphere 44.8
Subiculum
nTPM: 48.7
1901 Male, age 80, both hemispheres 56.1
2438 Female, age 94, left hemisphere 53.4
2042 Male, age 76, both hemispheres 47.3
1977 Female, age 85, both hemispheres 46.8
2729 Female, age 91, right hemisphere 45.0
2619 Male, age 74, both hemispheres 43.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 55.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.7
Samples: 197

Max nTPM: 98.1
Min nTPM: 24.5
Std nTPM: 15.3
Median nTPM: 55.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 98.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 97.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 92.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 92.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 92.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 86.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 86.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 83.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 82.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 81.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 80.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.0
FF:10169-103B7 60 years, female 164.2
FF:10153-102I9 76 years, female 115.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.8
Sample A Female 13.2
Sample B Female 10.1
Sample C Male 12.3
Sample D Male 7.8
Entorhinal cortex
nTPM: 11.0
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.2
Sample A Female 11.2
Sample B Female 11.5
Sample C Male 12.0
Sample D Male 9.2
Subiculum
nTPM: 12.4
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.8
Sample A Female 15.2
Sample B Female 11.8
Sample C Male 9.8
Sample D Male 12.6
Ventral hippocampus
nTPM: 9.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.4
Sample A Female 11.7
Sample B Female 9.2
Sample C Male 10.0
Sample D Male 8.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 30.3
Min nTPM: 27.9
Sample A Male 28.6
Sample B Male 30.3
Sample C Female 27.9
Sample D Female 29.4
Hippocampal formation
nTPM: 27.6
Samples: 4

Max nTPM: 33.9
Min nTPM: 22.6
Sample A Male 27.7
Sample B Male 26.0
Sample C Female 22.6
Sample D Female 33.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.1
413772 Antisense, RP_040809_01_C03, Mouse strain C57BL/6J (56 days, male) 11.6
81600104 Antisense, RP_080205_01_F05, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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