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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:55.1 nTPM
FANTOM5:325.9 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:117.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.0
2411 Female, age 72, unknown 52.2
1833 Male, age 53, unknown 50.9
1870 Female, age 42, unknown 50.8
2019 Male, age 18, unknown 48.7
1830 Male, age 51, unknown 48.2
1827 Male, age 72, unknown 40.1
2666 Male, age 74, left hemisphere 37.7
2828 Female, age 72, unknown 36.7
2586 Male, age 75, left hemisphere 34.3
2219 Male, age 76, both hemispheres 30.3
Dorsal raphe nucleus
nTPM: 39.5
2750 Male, age 76, both hemispheres 44.6
2016 Female, age 72, unknown 40.7
1828 Male, age 53, unknown 39.5
2298 Female, age 72, unknown 39.3
2047 Male, age 72, unknown 33.4
Inferior colliculus
nTPM: 36.6
2097 Female, age 72, unknown 39.9
1848 Female, age 42, unknown 37.1
1890 Male, age 53, unknown 35.0
2849 Male, age 72, unknown 34.7
Median raphe nucleus
nTPM: 54.0
2220 Male, age 76, midline 54.0
Pedunculopontine tegmental nucleus
nTPM: 43.4
2338 Male, age 61, both hemispheres 46.7
2334 Male, age 80, both hemispheres 43.6
1921 Female, age 85, both hemispheres 39.9
Periaquaductal grey, anterior
nTPM: 34.9
1947 Male, age 18, unknown 37.5
2502 Female, age 75, unknown 36.6
1795 Male, age 51, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 34.5
2464 Female, age 72, unknown 38.4
2850 Male, age 76, both hemispheres 35.9
1831 Male, age 72, unknown 35.7
1840 Male, age 53, unknown 28.2
Periaquaductal grey, lateral
nTPM: 35.0
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 34.5
2140 Male, age 76, both hemispheres 32.9
Pretectal area
nTPM: 40.8
1817 Female, age 42, unknown 48.3
1815 Male, age 53, unknown 46.5
2273 Male, age 74, both hemispheres 44.2
2007 Male, age 72, unknown 42.8
2667 Female, age 75, unknown 40.3
1816 Male, age 51, unknown 38.9
1944 Female, age 72, unknown 38.9
2316 Male, age 76, right hemisphere 38.2
2825 Male, age 18, unknown 38.1
2407 Male, age 75, both hemispheres 36.9
2224 Female, age 72, unknown 36.2
Red nucleus
nTPM: 49.0
1821 Female, age 72, unknown 60.1
1904 Male, age 53, unknown 55.7
1954 Female, age 42, unknown 55.7
1865 Male, age 51, unknown 53.8
2769 Male, age 72, unknown 50.9
2227 Male, age 72, unknown 50.3
2785 Male, age 18, unknown 49.1
2823 Male, age 76, right hemisphere 48.0
2503 Female, age 72, unknown 47.7
2725 Female, age 75, unknown 41.5
2588 Male, age 74, left hemisphere 38.6
2584 Male, age 75, left hemisphere 37.0
Substantia nigra
nTPM: 40.1
2409 Female, age 72, unknown 48.8
1889 Female, age 72, unknown 43.6
1941 Male, age 53, unknown 40.9
2590 Female, age 75, unknown 40.5
1851 Male, age 51, unknown 40.0
2241 Male, age 72, unknown 39.5
2583 Male, age 75, right hemisphere 38.7
2699 Male, age 18, unknown 37.4
2665 Male, age 74, both hemispheres 36.4
1916 Female, age 42, unknown 35.3
Superior colliculus
nTPM: 39.5
2587 Male, age 74, left hemisphere 45.8
1995 Male, age 72, unknown 43.9
2668 Female, age 75, unknown 43.5
1913 Female, age 42, unknown 41.3
1839 Male, age 51, unknown 39.9
1895 Male, age 76, right hemisphere 39.7
2087 Female, age 72, unknown 36.6
2261 Male, age 18, unknown 36.1
1796 Male, age 53, unknown 35.2
2664 Male, age 75, both hemispheres 33.0
Ventral tegmental area
nTPM: 39.9
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 45.3
1915 Female, age 42, unknown 41.4
1942 Male, age 51, unknown 36.8
2218 Male, age 76, both hemispheres 35.6
2021 Male, age 53, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 106.2
Min nTPM: 32.3
Std nTPM: 14.9
Median nTPM: 52.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 106.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 97.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 95.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 91.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 89.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 86.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 82.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 325.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 325.9
FF:10158-103A5 76 years, female 325.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.1
Pig sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 34.9
Sample A Female 47.2
Sample B Female 36.7
Sample C Male 37.8
Sample D Male 34.9
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 34.8
Min nTPM: 30.8
Sample B Female 33.8
Sample C Male 34.8
Sample D Male 30.8
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 43.9
Min nTPM: 31.2
Sample A Female 43.9
Sample B Female 35.2
Sample C Male 41.1
Sample D Male 31.2
Superior colliculi
nTPM: 36.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 35.6
Sample A Female 39.1
Sample B Female 36.8
Sample C Male 36.0
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 121.5
Min nTPM: 112.6
Sample A Male 118.7
Sample B Male 121.5
Sample C Female 112.6
Sample D Female 118.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
75988303 Antisense, RP_060606_02_F04, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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