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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA:22.4 nTPM
GTEx:51.0 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:74.9 nTPM
Allen mouse:4.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.9
1857 Female, age 85, left hemisphere 21.3
2288 Male, age 75, left hemisphere 20.6
1781 Male, age 74, unknown 20.1
2846 Female, age 79, unknown 19.9
1854 Male, age 80, left hemisphere 19.4
2290 Female, age 72, unknown 18.1
2289 Male, age 61, right hemisphere 17.4
2481 Female, age 94, left hemisphere 14.1
Claustrum
nTPM: 19.9
2198 Male, age 80, both hemispheres 24.2
2491 Male, age 75, both hemispheres 20.5
2568 Male, age 61, both hemispheres 20.4
2284 Female, age 91, both hemispheres 20.1
2392 Female, age 94, both hemispheres 19.6
1956 Male, age 74, unknown 19.1
2196 Female, age 79, unknown 18.6
2645 Female, age 72, unknown 18.2
2292 Female, age 85, both hemispheres 17.9
Globus pallidus, externus
nTPM: 15.5
2772 Female, age 79, unknown 20.0
2646 Male, age 61, right hemisphere 15.0
1996 Male, age 80, right hemisphere 14.7
2395 Male, age 75, both hemispheres 14.4
2567 Female, age 72, unknown 13.3
Globus pallidus, internus
nTPM: 16.1
2287 Male, age 75, right hemisphere 18.5
1818 Male, age 74, unknown 17.6
2778 Female, age 91, both hemispheres 16.6
2037 Male, age 80, right hemisphere 15.7
2483 Female, age 94, right hemisphere 15.4
2566 Female, age 72, unknown 14.9
2111 Female, age 85, right hemisphere 13.7
Nucleus accumbens
nTPM: 21.0
1856 Female, age 91, right hemisphere 31.7
1806 Female, age 85, left hemisphere 22.1
1783 Male, age 74, unknown 21.9
2824 Male, age 61, right hemisphere 21.0
2698 Female, age 72, unknown 20.3
2286 Male, age 75, left hemisphere 18.2
2732 Male, age 80, right hemisphere 17.6
2391 Female, age 94, left hemisphere 15.2
Nucleus basalis of Meynert
nTPM: 16.8
2821 Male, age 75, both hemispheres 18.2
2484 Female, age 94, left hemisphere 17.2
2393 Male, age 80, right hemisphere 16.6
2569 Male, age 61, both hemispheres 15.4
Nucleus of the diagonal band
nTPM: 22.4
1812 Female, age 91, both hemispheres 24.4
2775 Male, age 80, right hemisphere 23.7
1979 Male, age 74, unknown 21.7
2029 Male, age 61, right hemisphere 21.3
2195 Female, age 85, both hemispheres 21.2
Olfactory tubercle
nTPM: 21.8
1998 Female, age 91, both hemispheres 24.6
2487 Female, age 94, left hemisphere 22.5
1846 Male, age 80, right hemisphere 22.4
2856 Male, age 75, right hemisphere 17.6
Putamen
nTPM: 19.3
1937 Female, age 91, right hemisphere 24.0
1838 Male, age 80, right hemisphere 22.0
2466 Female, age 79, unknown 20.9
2647 Male, age 75, left hemisphere 18.5
2482 Female, age 94, left hemisphere 17.5
1829 Male, age 74, unknown 17.4
2489 Female, age 72, unknown 14.6
Septal nuclei
nTPM: 20.4
1960 Male, age 74, unknown 24.2
2031 Female, age 72, unknown 23.1
2009 Female, age 91, both hemispheres 22.1
2629 Female, age 94, right hemisphere 21.7
2059 Female, age 85, both hemispheres 19.2
2394 Male, age 61, left hemisphere 16.9
2199 Male, age 80, right hemisphere 15.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.6
Samples: 246

Max nTPM: 111.8
Min nTPM: 5.5
Std nTPM: 19.4
Median nTPM: 40.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 111.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 104.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 96.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 94.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 91.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 89.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 80.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 79.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 79.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.0
Samples: 246

Max nTPM: 116.5
Min nTPM: 4.4
Std nTPM: 19.6
Median nTPM: 50.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 116.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 113.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 103.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 95.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 94.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 94.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 90.0
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 88.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 87.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 87.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 87.0
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Brain - Putamen (basal ganglia)
Average nTPM: 41.9
Samples: 205

Max nTPM: 99.5
Min nTPM: 7.2
Std nTPM: 18.9
Median nTPM: 41.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 99.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 97.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 94.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 90.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 88.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 83.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 83.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 76.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 74.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 73.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 72.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.7
FF:10164-103B2 76 years, female 19.7
Globus pallidus
Scaled Tags Per Million: 7.7
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 7.5
Nucleus accumbens
Scaled Tags Per Million: 19.9
FF:10037-101F1 23-56 years, mixed 19.9
Putamen
Scaled Tags Per Million: 25.5
FF:10176-103C5 60 years, female 25.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Caudate
nTPM: 44.6
Samples: 4

Max nTPM: 54.9
Min nTPM: 37.9
Sample A Female 37.9
Sample B Female 44.6
Sample C Male 54.9
Sample D Male 40.8
Putamen
nTPM: 42.3
Samples: 4

Max nTPM: 60.5
Min nTPM: 26.7
Sample A Female 26.7
Sample B Female 37.9
Sample C Male 60.5
Sample D Male 44.1
Septum
nTPM: 31.6
Samples: 4

Max nTPM: 37.6
Min nTPM: 24.6
Sample A Female 37.6
Sample B Female 32.0
Sample C Male 32.2
Sample D Male 24.6
Ventral pallidum
nTPM: 34.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 30.0
Sample A Female 36.1
Sample B Female 36.3
Sample C Male 33.9
Sample D Male 30.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 74.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 69.4
Samples: 4

Max nTPM: 87.8
Min nTPM: 57.9
Sample A Male 70.0
Sample B Male 87.8
Sample C Female 57.9
Sample D Female 61.7
Septum
nTPM: 50.6
Samples: 4

Max nTPM: 56.1
Min nTPM: 40.2
Sample A Male 56.1
Sample B Male 54.7
Sample C Female 51.4
Sample D Female 40.2
Ventral forebrain
nTPM: 74.9
Samples: 4

Max nTPM: 86.6
Min nTPM: 53.6
Sample A Male 79.8
Sample B Male 53.6
Sample C Female 86.6
Sample D Female 79.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.1
73617678 Antisense, RP_051130_02_D08, Mouse strain C57BL/6J (56 days, male) 4.1
Pallidum
Expression energy: 2.2
73617678 Antisense, RP_051130_02_D08, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.