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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.1 nTPM
HPA:122.1 nTPM
GTEx:260.2 nTPM
FANTOM5:312.2 Scaled Tags Per Million
Pig:264.9 nTPM
Mouse:393.0 nTPM
Allen mouse:15.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.8
2586 Male, age 75, left hemisphere 113.2
2019 Male, age 18, unknown 112.3
2219 Male, age 76, both hemispheres 111.9
2666 Male, age 74, left hemisphere 111.9
1870 Female, age 42, unknown 110.4
1827 Male, age 72, unknown 109.8
2411 Female, age 72, unknown 109.5
1833 Male, age 53, unknown 100.6
1830 Male, age 51, unknown 99.5
2828 Female, age 72, unknown 99.3
Dorsal raphe nucleus
nTPM: 109.0
2298 Female, age 72, unknown 116.7
2047 Male, age 72, unknown 111.0
1828 Male, age 53, unknown 109.0
2750 Male, age 76, both hemispheres 107.6
2016 Female, age 72, unknown 100.9
Inferior colliculus
nTPM: 107.2
2097 Female, age 72, unknown 116.4
1890 Male, age 53, unknown 105.6
1848 Female, age 42, unknown 105.1
2849 Male, age 72, unknown 101.6
Median raphe nucleus
nTPM: 112.1
2220 Male, age 76, midline 112.1
Pedunculopontine tegmental nucleus
nTPM: 108.5
1921 Female, age 85, both hemispheres 110.2
2334 Male, age 80, both hemispheres 109.8
2338 Male, age 61, both hemispheres 105.3
Periaquaductal grey, anterior
nTPM: 112.3
2502 Female, age 75, unknown 112.7
1947 Male, age 18, unknown 112.4
1795 Male, age 51, unknown 111.7
Periaquaductal grey, dorsal
nTPM: 107.3
1840 Male, age 53, unknown 114.3
1831 Male, age 72, unknown 106.7
2464 Female, age 72, unknown 104.6
2850 Male, age 76, both hemispheres 103.6
Periaquaductal grey, lateral
nTPM: 98.8
2272 Male, age 74, both hemispheres 102.7
2053 Male, age 18, unknown 102.3
2140 Male, age 76, both hemispheres 91.2
Pretectal area
nTPM: 111.1
1816 Male, age 51, unknown 125.5
1944 Female, age 72, unknown 124.4
2007 Male, age 72, unknown 122.2
1817 Female, age 42, unknown 116.4
2667 Female, age 75, unknown 113.1
1815 Male, age 53, unknown 110.6
2224 Female, age 72, unknown 109.7
2407 Male, age 75, both hemispheres 101.9
2273 Male, age 74, both hemispheres 99.9
2825 Male, age 18, unknown 99.2
2316 Male, age 76, right hemisphere 99.0
Red nucleus
nTPM: 103.5
1821 Female, age 72, unknown 115.1
2785 Male, age 18, unknown 108.4
1954 Female, age 42, unknown 107.5
2725 Female, age 75, unknown 106.5
1904 Male, age 53, unknown 105.6
2584 Male, age 75, left hemisphere 101.9
2769 Male, age 72, unknown 101.1
2227 Male, age 72, unknown 100.8
2503 Female, age 72, unknown 100.4
2588 Male, age 74, left hemisphere 99.5
2823 Male, age 76, right hemisphere 98.2
1865 Male, age 51, unknown 97.5
Substantia nigra
nTPM: 122.1
1916 Female, age 42, unknown 135.6
1851 Male, age 51, unknown 130.8
1889 Female, age 72, unknown 126.8
1941 Male, age 53, unknown 126.8
2665 Male, age 74, both hemispheres 123.1
2241 Male, age 72, unknown 123.0
2699 Male, age 18, unknown 118.9
2409 Female, age 72, unknown 117.3
2583 Male, age 75, right hemisphere 112.6
2590 Female, age 75, unknown 106.0
Superior colliculus
nTPM: 108.1
2668 Female, age 75, unknown 115.4
2087 Female, age 72, unknown 114.1
2664 Male, age 75, both hemispheres 112.7
1895 Male, age 76, right hemisphere 110.2
1796 Male, age 53, unknown 107.4
2261 Male, age 18, unknown 106.5
2587 Male, age 74, left hemisphere 104.7
1839 Male, age 51, unknown 103.9
1995 Male, age 72, unknown 103.6
1913 Female, age 42, unknown 102.8
Ventral tegmental area
nTPM: 113.6
1915 Female, age 42, unknown 119.1
2410 Female, age 72, unknown 118.9
1942 Male, age 51, unknown 115.4
2218 Male, age 76, both hemispheres 113.1
2021 Male, age 53, unknown 108.4
2223 Female, age 72, unknown 107.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 260.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 260.2
Samples: 139

Max nTPM: 469.6
Min nTPM: 109.3
Std nTPM: 73.6
Median nTPM: 249.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 469.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 453.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 450.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 448.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 443.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 423.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 419.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 398.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 397.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 394.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 394.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 312.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 312.2
FF:10158-103A5 76 years, female 312.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.9
Pig sample Sample description nTPM
Midbrain
nTPM: 256.3
Samples: 4

Max nTPM: 319.5
Min nTPM: 229.8
Sample A Female 319.5
Sample B Female 232.7
Sample C Male 243.0
Sample D Male 229.8
Periaqueductal gray
nTPM: 192.2
Samples: 3

Max nTPM: 220.0
Min nTPM: 166.6
Sample B Female 190.0
Sample C Male 220.0
Sample D Male 166.6
Substantia nigra
nTPM: 260.0
Samples: 4

Max nTPM: 367.8
Min nTPM: 167.7
Sample A Female 367.8
Sample B Female 237.8
Sample C Male 266.6
Sample D Male 167.7
Superior colliculi
nTPM: 264.9
Samples: 4

Max nTPM: 327.7
Min nTPM: 217.7
Sample A Female 327.7
Sample B Female 265.2
Sample C Male 248.9
Sample D Male 217.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 393.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 393.0
Samples: 4

Max nTPM: 468.3
Min nTPM: 330.6
Sample A Male 468.3
Sample B Male 364.1
Sample C Female 330.6
Sample D Female 409.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.1
69782533 Antisense, RP_050505_03_B12, Mouse strain C57BL/6J (56 days, male) 15.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.