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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:22.8 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:2.3 nTPM

CAUDATE - Antibody stainingi
Antibody HPA007164Antibody HPA008905
Glial cells Not detectedLow
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.9
2289 Male, age 61, right hemisphere 24.4
1781 Male, age 74, unknown 22.0
2481 Female, age 94, left hemisphere 20.9
1857 Female, age 85, left hemisphere 20.8
1854 Male, age 80, left hemisphere 20.6
2290 Female, age 72, unknown 20.3
2288 Male, age 75, left hemisphere 19.6
2846 Female, age 79, unknown 18.6
Claustrum
nTPM: 21.6
2568 Male, age 61, both hemispheres 25.0
2645 Female, age 72, unknown 23.2
2491 Male, age 75, both hemispheres 22.5
2292 Female, age 85, both hemispheres 22.0
2198 Male, age 80, both hemispheres 21.5
2196 Female, age 79, unknown 21.3
2284 Female, age 91, both hemispheres 21.3
2392 Female, age 94, both hemispheres 19.1
1956 Male, age 74, unknown 18.8
Globus pallidus, externus
nTPM: 24.0
2567 Female, age 72, unknown 27.5
2646 Male, age 61, right hemisphere 27.0
1996 Male, age 80, right hemisphere 23.0
2772 Female, age 79, unknown 21.5
2395 Male, age 75, both hemispheres 21.0
Globus pallidus, internus
nTPM: 23.0
2111 Female, age 85, right hemisphere 25.3
1818 Male, age 74, unknown 24.5
2566 Female, age 72, unknown 24.1
2483 Female, age 94, right hemisphere 22.6
2037 Male, age 80, right hemisphere 22.1
2287 Male, age 75, right hemisphere 21.2
2778 Female, age 91, both hemispheres 21.1
Nucleus accumbens
nTPM: 19.8
2732 Male, age 80, right hemisphere 21.4
2391 Female, age 94, left hemisphere 20.5
1783 Male, age 74, unknown 20.1
1806 Female, age 85, left hemisphere 19.7
2286 Male, age 75, left hemisphere 19.6
2824 Male, age 61, right hemisphere 19.5
2698 Female, age 72, unknown 19.0
1856 Female, age 91, right hemisphere 18.7
Nucleus basalis of Meynert
nTPM: 21.9
2569 Male, age 61, both hemispheres 28.5
2484 Female, age 94, left hemisphere 20.2
2393 Male, age 80, right hemisphere 19.6
2821 Male, age 75, both hemispheres 19.3
Nucleus of the diagonal band
nTPM: 19.9
1979 Male, age 74, unknown 21.6
2029 Male, age 61, right hemisphere 20.6
2775 Male, age 80, right hemisphere 19.9
2195 Female, age 85, both hemispheres 19.8
1812 Female, age 91, both hemispheres 17.6
Olfactory tubercle
nTPM: 20.1
2856 Male, age 75, right hemisphere 21.5
2487 Female, age 94, left hemisphere 20.5
1998 Female, age 91, both hemispheres 19.3
1846 Male, age 80, right hemisphere 19.1
Putamen
nTPM: 21.7
2489 Female, age 72, unknown 23.9
2647 Male, age 75, left hemisphere 23.4
1838 Male, age 80, right hemisphere 22.0
1829 Male, age 74, unknown 20.7
1937 Female, age 91, right hemisphere 20.6
2466 Female, age 79, unknown 20.6
2482 Female, age 94, left hemisphere 20.6
Septal nuclei
nTPM: 20.3
2199 Male, age 80, right hemisphere 22.7
2394 Male, age 61, left hemisphere 21.8
2059 Female, age 85, both hemispheres 20.5
1960 Male, age 74, unknown 20.3
2009 Female, age 91, both hemispheres 18.9
2031 Female, age 72, unknown 18.9
2629 Female, age 94, right hemisphere 18.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 41.3
Min nTPM: 3.9
Std nTPM: 5.7
Median nTPM: 21.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 41.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 36.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 36.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 34.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 33.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 33.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 33.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 32.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 32.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 31.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.1
Samples: 246

Max nTPM: 43.6
Min nTPM: 6.7
Std nTPM: 6.2
Median nTPM: 20.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 43.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 37.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 36.1
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 35.6
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 35.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 34.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 33.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 33.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 32.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 32.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 32.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.8
Samples: 205

Max nTPM: 43.1
Min nTPM: 10.8
Std nTPM: 5.5
Median nTPM: 22.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 43.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 37.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 35.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 33.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 32.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 32.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 31.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 31.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 31.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.2
FF:10164-103B2 76 years, female 3.2
Globus pallidus
Scaled Tags Per Million: 5.1
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 4.6
Nucleus accumbens
Scaled Tags Per Million: 4.4
FF:10037-101F1 23-56 years, mixed 4.4
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.5
Putamen
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Female 1.0
Sample B Female 0.7
Sample C Male 0.6
Sample D Male 0.7
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.6
Sample C Male 0.4
Sample D Male 1.0
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.9
Sample A Male 1.8
Sample B Male 1.6
Sample C Female 1.5
Sample D Female 0.9
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.9
Sample A Male 2.5
Sample B Male 1.3
Sample C Female 2.1
Sample D Female 0.9
Ventral forebrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.1
Sample A Male 1.8
Sample B Male 3.1
Sample C Female 3.4
Sample D Female 1.1

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The Human Protein Atlas

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