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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.8 nTPM
HPA:23.8 nTPM
GTEx:19.7 nTPM
FANTOM5:4.2 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:2.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2586 Male, age 75, left hemisphere 26.0
1833 Male, age 53, unknown 23.7
2828 Female, age 72, unknown 23.6
1827 Male, age 72, unknown 22.8
2411 Female, age 72, unknown 22.8
1830 Male, age 51, unknown 22.2
2666 Male, age 74, left hemisphere 22.0
2219 Male, age 76, both hemispheres 21.6
1870 Female, age 42, unknown 21.4
2019 Male, age 18, unknown 21.3
Dorsal raphe nucleus
nTPM: 22.7
2047 Male, age 72, unknown 24.7
1828 Male, age 53, unknown 22.8
2016 Female, age 72, unknown 22.6
2298 Female, age 72, unknown 22.0
2750 Male, age 76, both hemispheres 21.5
Inferior colliculus
nTPM: 23.2
2849 Male, age 72, unknown 24.0
1890 Male, age 53, unknown 23.5
2097 Female, age 72, unknown 22.6
1848 Female, age 42, unknown 22.4
Median raphe nucleus
nTPM: 20.2
2220 Male, age 76, midline 20.2
Pedunculopontine tegmental nucleus
nTPM: 20.4
2334 Male, age 80, both hemispheres 21.5
1921 Female, age 85, both hemispheres 20.8
2338 Male, age 61, both hemispheres 18.9
Periaquaductal grey, anterior
nTPM: 21.6
1947 Male, age 18, unknown 23.4
2502 Female, age 75, unknown 21.3
1795 Male, age 51, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 23.8
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 24.5
2850 Male, age 76, both hemispheres 23.2
1840 Male, age 53, unknown 22.9
Periaquaductal grey, lateral
nTPM: 23.1
2140 Male, age 76, both hemispheres 24.9
2272 Male, age 74, both hemispheres 22.4
2053 Male, age 18, unknown 22.0
Pretectal area
nTPM: 21.5
2316 Male, age 76, right hemisphere 23.8
2825 Male, age 18, unknown 22.9
2667 Female, age 75, unknown 22.4
1817 Female, age 42, unknown 21.9
2224 Female, age 72, unknown 21.6
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 21.0
2407 Male, age 75, both hemispheres 21.0
2007 Male, age 72, unknown 20.8
1815 Male, age 53, unknown 20.7
2273 Male, age 74, both hemispheres 19.9
Red nucleus
nTPM: 23.5
2227 Male, age 72, unknown 25.5
2588 Male, age 74, left hemisphere 25.3
2769 Male, age 72, unknown 25.1
1865 Male, age 51, unknown 24.5
2503 Female, age 72, unknown 24.3
2823 Male, age 76, right hemisphere 23.7
1954 Female, age 42, unknown 23.1
2785 Male, age 18, unknown 23.1
1904 Male, age 53, unknown 22.6
2725 Female, age 75, unknown 22.3
2584 Male, age 75, left hemisphere 21.5
1821 Female, age 72, unknown 21.3
Substantia nigra
nTPM: 20.9
2665 Male, age 74, both hemispheres 22.7
2699 Male, age 18, unknown 22.4
2583 Male, age 75, right hemisphere 21.7
1889 Female, age 72, unknown 21.5
2409 Female, age 72, unknown 21.1
1941 Male, age 53, unknown 20.9
2590 Female, age 75, unknown 20.9
1851 Male, age 51, unknown 20.7
1916 Female, age 42, unknown 20.2
2241 Male, age 72, unknown 16.9
Superior colliculus
nTPM: 21.8
1839 Male, age 51, unknown 23.4
1895 Male, age 76, right hemisphere 22.9
2664 Male, age 75, both hemispheres 22.5
1913 Female, age 42, unknown 22.1
2087 Female, age 72, unknown 22.1
1995 Male, age 72, unknown 22.0
2668 Female, age 75, unknown 21.8
1796 Male, age 53, unknown 21.4
2587 Male, age 74, left hemisphere 20.0
2261 Male, age 18, unknown 19.7
Ventral tegmental area
nTPM: 21.7
2021 Male, age 53, unknown 22.7
1942 Male, age 51, unknown 22.0
2223 Female, age 72, unknown 21.7
2410 Female, age 72, unknown 21.6
1915 Female, age 42, unknown 21.4
2218 Male, age 76, both hemispheres 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 139

Max nTPM: 47.5
Min nTPM: 8.8
Std nTPM: 5.9
Median nTPM: 19.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 47.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 32.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 30.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 30.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 30.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 29.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 29.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 29.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.2
FF:10158-103A5 76 years, female 4.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 0.9
Sample A Female 10.5
Sample B Female 1.5
Sample C Male 1.2
Sample D Male 0.9
Periaqueductal gray
nTPM: 1.4
Samples: 3

Max nTPM: 1.6
Min nTPM: 1.2
Sample B Female 1.2
Sample C Male 1.3
Sample D Male 1.6
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 9.1
Min nTPM: 1.6
Sample A Female 2.5
Sample B Female 9.1
Sample C Male 1.6
Sample D Male 5.2
Superior colliculi
nTPM: 3.2
Samples: 4

Max nTPM: 6.0
Min nTPM: 1.4
Sample A Female 3.4
Sample B Female 6.0
Sample C Male 1.4
Sample D Male 2.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Male 2.4
Sample B Male 1.5
Sample C Female 2.5
Sample D Female 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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