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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:61.7 nTPM
HPA:61.7 nTPM
GTEx:67.6 nTPM
FANTOM5:83.5 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:111.4 nTPM
Allen mouse:2.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056309
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.4
1781 Male, age 74, unknown 56.4
2481 Female, age 94, left hemisphere 55.8
2290 Female, age 72, unknown 55.5
2846 Female, age 79, unknown 54.8
2288 Male, age 75, left hemisphere 54.6
1854 Male, age 80, left hemisphere 53.4
1857 Female, age 85, left hemisphere 52.9
2289 Male, age 61, right hemisphere 51.8
Claustrum
nTPM: 61.7
1956 Male, age 74, unknown 65.8
2292 Female, age 85, both hemispheres 65.1
2568 Male, age 61, both hemispheres 64.6
2198 Male, age 80, both hemispheres 64.0
2645 Female, age 72, unknown 62.7
2196 Female, age 79, unknown 61.8
2491 Male, age 75, both hemispheres 59.5
2284 Female, age 91, both hemispheres 58.9
2392 Female, age 94, both hemispheres 53.2
Globus pallidus, externus
nTPM: 60.1
2646 Male, age 61, right hemisphere 63.0
1996 Male, age 80, right hemisphere 61.6
2772 Female, age 79, unknown 61.0
2567 Female, age 72, unknown 59.7
2395 Male, age 75, both hemispheres 55.4
Globus pallidus, internus
nTPM: 60.8
2111 Female, age 85, right hemisphere 65.0
2287 Male, age 75, right hemisphere 64.4
2566 Female, age 72, unknown 61.8
2483 Female, age 94, right hemisphere 60.9
2778 Female, age 91, both hemispheres 60.0
1818 Male, age 74, unknown 57.9
2037 Male, age 80, right hemisphere 55.4
Nucleus accumbens
nTPM: 53.9
2698 Female, age 72, unknown 57.6
1783 Male, age 74, unknown 54.7
2286 Male, age 75, left hemisphere 54.7
1806 Female, age 85, left hemisphere 53.9
2732 Male, age 80, right hemisphere 53.6
2391 Female, age 94, left hemisphere 53.1
1856 Female, age 91, right hemisphere 52.4
2824 Male, age 61, right hemisphere 51.1
Nucleus basalis of Meynert
nTPM: 55.3
2569 Male, age 61, both hemispheres 63.6
2821 Male, age 75, both hemispheres 55.1
2484 Female, age 94, left hemisphere 52.1
2393 Male, age 80, right hemisphere 50.5
Nucleus of the diagonal band
nTPM: 56.1
2029 Male, age 61, right hemisphere 57.4
2775 Male, age 80, right hemisphere 57.0
1812 Female, age 91, both hemispheres 56.7
2195 Female, age 85, both hemispheres 55.2
1979 Male, age 74, unknown 54.3
Olfactory tubercle
nTPM: 57.9
1846 Male, age 80, right hemisphere 59.2
2487 Female, age 94, left hemisphere 58.7
2856 Male, age 75, right hemisphere 57.3
1998 Female, age 91, both hemispheres 56.3
Putamen
nTPM: 54.8
2647 Male, age 75, left hemisphere 62.1
2482 Female, age 94, left hemisphere 57.1
2489 Female, age 72, unknown 54.8
1829 Male, age 74, unknown 53.9
1937 Female, age 91, right hemisphere 53.7
1838 Male, age 80, right hemisphere 51.1
2466 Female, age 79, unknown 51.0
Septal nuclei
nTPM: 55.6
1960 Male, age 74, unknown 58.0
2031 Female, age 72, unknown 57.6
2629 Female, age 94, right hemisphere 57.5
2059 Female, age 85, both hemispheres 55.4
2199 Male, age 80, right hemisphere 54.8
2394 Male, age 61, left hemisphere 53.0
2009 Female, age 91, both hemispheres 52.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.8
Samples: 246

Max nTPM: 116.9
Min nTPM: 25.4
Std nTPM: 13.0
Median nTPM: 57.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 116.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 109.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 102.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 97.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 94.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 93.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 88.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 87.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 86.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 83.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.3
Samples: 246

Max nTPM: 139.6
Min nTPM: 37.8
Std nTPM: 16.0
Median nTPM: 59.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 139.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 112.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 110.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 107.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 102.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 102.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 101.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 98.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 98.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 96.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 94.1
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Brain - Putamen (basal ganglia)
Average nTPM: 67.6
Samples: 205

Max nTPM: 109.7
Min nTPM: 36.6
Std nTPM: 13.7
Median nTPM: 66.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 109.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 107.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 105.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 103.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 103.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 100.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 99.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 97.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 95.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 92.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 92.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.6
FF:10164-103B2 76 years, female 63.6
Globus pallidus
Scaled Tags Per Million: 71.4
FF:10175-103C4 60 years, female 80.5
FF:10161-103A8 76 years, female 62.3
Nucleus accumbens
Scaled Tags Per Million: 83.5
FF:10037-101F1 23-56 years, mixed 83.5
Putamen
Scaled Tags Per Million: 63.0
FF:10176-103C5 60 years, female 63.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Caudate
nTPM: 33.7
Samples: 4

Max nTPM: 37.5
Min nTPM: 30.5
Sample A Female 30.5
Sample B Female 36.0
Sample C Male 37.5
Sample D Male 30.9
Putamen
nTPM: 37.8
Samples: 4

Max nTPM: 43.4
Min nTPM: 30.7
Sample A Female 35.6
Sample B Female 30.7
Sample C Male 43.4
Sample D Male 41.4
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 37.4
Min nTPM: 33.5
Sample A Female 35.2
Sample B Female 33.5
Sample C Male 37.4
Sample D Male 35.8
Ventral pallidum
nTPM: 35.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 30.8
Sample A Female 30.8
Sample B Female 36.1
Sample C Male 39.8
Sample D Male 34.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 111.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.7
Samples: 4

Max nTPM: 115.9
Min nTPM: 90.7
Sample A Male 97.4
Sample B Male 115.9
Sample C Female 90.7
Sample D Female 98.8
Septum
nTPM: 106.9
Samples: 4

Max nTPM: 115.8
Min nTPM: 100.2
Sample A Male 115.8
Sample B Male 103.7
Sample C Female 108.0
Sample D Female 100.2
Ventral forebrain
nTPM: 111.5
Samples: 4

Max nTPM: 122.9
Min nTPM: 99.7
Sample A Male 114.6
Sample B Male 99.7
Sample C Female 122.9
Sample D Female 108.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
68076557 Antisense, RP_040923_02_G06, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 2.2
68076557 Antisense, RP_040923_02_G06, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.