ABOUTMENU
HELP
NEWS
SGTA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.9 nTPM
HPA:62.9 nTPM
GTEx:71.9 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:72.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.3
2586 Male, age 75, left hemisphere 73.6
1870 Female, age 42, unknown 61.8
1830 Male, age 51, unknown 61.2
2828 Female, age 72, unknown 60.3
1833 Male, age 53, unknown 60.2
2019 Male, age 18, unknown 59.5
2666 Male, age 74, left hemisphere 58.4
2411 Female, age 72, unknown 57.7
1827 Male, age 72, unknown 57.6
2219 Male, age 76, both hemispheres 52.7
Dorsal raphe nucleus
nTPM: 54.8
2750 Male, age 76, both hemispheres 59.4
2047 Male, age 72, unknown 54.9
1828 Male, age 53, unknown 54.2
2016 Female, age 72, unknown 53.6
2298 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 54.4
1848 Female, age 42, unknown 55.9
1890 Male, age 53, unknown 55.9
2849 Male, age 72, unknown 53.5
2097 Female, age 72, unknown 52.3
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Pedunculopontine tegmental nucleus
nTPM: 55.6
2334 Male, age 80, both hemispheres 56.9
1921 Female, age 85, both hemispheres 55.5
2338 Male, age 61, both hemispheres 54.4
Periaquaductal grey, anterior
nTPM: 57.3
2502 Female, age 75, unknown 58.7
1947 Male, age 18, unknown 57.0
1795 Male, age 51, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 53.3
1831 Male, age 72, unknown 54.6
1840 Male, age 53, unknown 53.2
2850 Male, age 76, both hemispheres 52.9
2464 Female, age 72, unknown 52.5
Periaquaductal grey, lateral
nTPM: 53.6
2053 Male, age 18, unknown 55.9
2140 Male, age 76, both hemispheres 52.8
2272 Male, age 74, both hemispheres 52.0
Pretectal area
nTPM: 57.6
2007 Male, age 72, unknown 61.3
1817 Female, age 42, unknown 61.2
1815 Male, age 53, unknown 60.6
2407 Male, age 75, both hemispheres 59.9
1944 Female, age 72, unknown 58.6
2825 Male, age 18, unknown 58.1
1816 Male, age 51, unknown 57.8
2667 Female, age 75, unknown 57.3
2316 Male, age 76, right hemisphere 54.1
2224 Female, age 72, unknown 53.0
2273 Male, age 74, both hemispheres 52.1
Red nucleus
nTPM: 62.9
2584 Male, age 75, left hemisphere 67.5
1865 Male, age 51, unknown 66.0
1904 Male, age 53, unknown 65.1
2588 Male, age 74, left hemisphere 63.0
2227 Male, age 72, unknown 62.9
2503 Female, age 72, unknown 62.6
2769 Male, age 72, unknown 62.1
1954 Female, age 42, unknown 61.6
2785 Male, age 18, unknown 61.6
2823 Male, age 76, right hemisphere 61.3
2725 Female, age 75, unknown 61.2
1821 Female, age 72, unknown 60.1
Substantia nigra
nTPM: 59.0
2583 Male, age 75, right hemisphere 65.3
1889 Female, age 72, unknown 61.5
1851 Male, age 51, unknown 61.3
1916 Female, age 42, unknown 60.4
2665 Male, age 74, both hemispheres 58.9
2699 Male, age 18, unknown 58.6
2409 Female, age 72, unknown 57.3
2590 Female, age 75, unknown 56.6
1941 Male, age 53, unknown 56.4
2241 Male, age 72, unknown 54.1
Superior colliculus
nTPM: 60.1
2664 Male, age 75, both hemispheres 65.4
1995 Male, age 72, unknown 63.9
1913 Female, age 42, unknown 63.8
2668 Female, age 75, unknown 62.6
1796 Male, age 53, unknown 58.5
2587 Male, age 74, left hemisphere 58.5
2261 Male, age 18, unknown 58.3
1895 Male, age 76, right hemisphere 57.1
2087 Female, age 72, unknown 56.5
1839 Male, age 51, unknown 56.0
Ventral tegmental area
nTPM: 59.6
2223 Female, age 72, unknown 62.9
2410 Female, age 72, unknown 61.0
1915 Female, age 42, unknown 60.1
2218 Male, age 76, both hemispheres 58.5
1942 Male, age 51, unknown 58.2
2021 Male, age 53, unknown 57.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.9
Samples: 139

Max nTPM: 175.2
Min nTPM: 34.5
Std nTPM: 19.1
Median nTPM: 68.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 175.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 150.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 125.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 108.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 106.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 102.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 102.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 99.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.1
Pig sample Sample description nTPM
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 56.1
Min nTPM: 33.3
Sample A Female 56.1
Sample B Female 33.3
Sample C Male 46.1
Sample D Male 37.0
Periaqueductal gray
nTPM: 31.2
Samples: 3

Max nTPM: 33.7
Min nTPM: 29.9
Sample B Female 29.9
Sample C Male 33.7
Sample D Male 30.1
Substantia nigra
nTPM: 36.8
Samples: 4

Max nTPM: 43.3
Min nTPM: 30.6
Sample A Female 43.3
Sample B Female 30.6
Sample C Male 38.9
Sample D Male 34.2
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 47.0
Min nTPM: 36.7
Sample A Female 45.3
Sample B Female 36.7
Sample C Male 47.0
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 80.7
Min nTPM: 66.0
Sample A Male 80.7
Sample B Male 67.8
Sample C Female 66.0
Sample D Female 74.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68076557 Antisense, RP_040923_02_G06, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.