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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA:29.4 nTPM
GTEx:69.5 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:31.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2666 Male, age 74, left hemisphere 30.5
2586 Male, age 75, left hemisphere 29.1
1870 Female, age 42, unknown 28.6
2828 Female, age 72, unknown 28.5
1833 Male, age 53, unknown 28.2
2411 Female, age 72, unknown 27.6
1830 Male, age 51, unknown 27.5
1827 Male, age 72, unknown 27.2
2219 Male, age 76, both hemispheres 27.2
2019 Male, age 18, unknown 27.0
Dorsal raphe nucleus
nTPM: 27.1
2016 Female, age 72, unknown 27.5
2298 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 27.2
2750 Male, age 76, both hemispheres 27.2
2047 Male, age 72, unknown 26.1
Inferior colliculus
nTPM: 27.7
1890 Male, age 53, unknown 28.6
2849 Male, age 72, unknown 28.2
1848 Female, age 42, unknown 27.2
2097 Female, age 72, unknown 26.8
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Pedunculopontine tegmental nucleus
nTPM: 27.6
2334 Male, age 80, both hemispheres 28.2
1921 Female, age 85, both hemispheres 27.4
2338 Male, age 61, both hemispheres 27.0
Periaquaductal grey, anterior
nTPM: 28.5
2502 Female, age 75, unknown 29.9
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 26.9
1831 Male, age 72, unknown 27.1
1840 Male, age 53, unknown 27.0
2464 Female, age 72, unknown 27.0
2850 Male, age 76, both hemispheres 26.6
Periaquaductal grey, lateral
nTPM: 27.0
2053 Male, age 18, unknown 27.4
2140 Male, age 76, both hemispheres 26.9
2272 Male, age 74, both hemispheres 26.5
Pretectal area
nTPM: 27.0
1817 Female, age 42, unknown 27.8
1815 Male, age 53, unknown 27.4
2224 Female, age 72, unknown 27.4
2007 Male, age 72, unknown 27.2
1816 Male, age 51, unknown 27.1
2825 Male, age 18, unknown 27.0
2273 Male, age 74, both hemispheres 26.9
2316 Male, age 76, right hemisphere 26.9
2667 Female, age 75, unknown 26.7
1944 Female, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 26.5
Red nucleus
nTPM: 29.4
2503 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 30.7
1904 Male, age 53, unknown 29.8
2769 Male, age 72, unknown 29.8
1821 Female, age 72, unknown 29.7
2725 Female, age 75, unknown 29.5
2588 Male, age 74, left hemisphere 29.4
2227 Male, age 72, unknown 29.3
2785 Male, age 18, unknown 28.9
2584 Male, age 75, left hemisphere 28.6
1954 Female, age 42, unknown 28.2
2823 Male, age 76, right hemisphere 27.2
Substantia nigra
nTPM: 28.2
2665 Male, age 74, both hemispheres 30.6
2699 Male, age 18, unknown 29.7
1851 Male, age 51, unknown 29.4
2409 Female, age 72, unknown 28.4
2590 Female, age 75, unknown 28.2
1889 Female, age 72, unknown 27.5
1916 Female, age 42, unknown 27.4
1941 Male, age 53, unknown 27.3
2241 Male, age 72, unknown 27.2
2583 Male, age 75, right hemisphere 26.6
Superior colliculus
nTPM: 28.0
2587 Male, age 74, left hemisphere 30.0
1913 Female, age 42, unknown 29.8
1995 Male, age 72, unknown 29.8
2261 Male, age 18, unknown 27.9
1796 Male, age 53, unknown 27.7
2664 Male, age 75, both hemispheres 27.3
1839 Male, age 51, unknown 26.9
2668 Female, age 75, unknown 26.9
2087 Female, age 72, unknown 26.8
1895 Male, age 76, right hemisphere 26.5
Ventral tegmental area
nTPM: 28.0
2410 Female, age 72, unknown 29.0
1915 Female, age 42, unknown 28.7
2223 Female, age 72, unknown 28.4
1942 Male, age 51, unknown 28.1
2218 Male, age 76, both hemispheres 27.1
2021 Male, age 53, unknown 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.5
Samples: 139

Max nTPM: 154.9
Min nTPM: 32.6
Std nTPM: 21.4
Median nTPM: 67.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 154.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 144.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 116.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 112.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 108.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 107.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 104.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 101.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 99.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 9.9
Sample A Female 18.8
Sample B Female 9.9
Sample C Male 10.8
Sample D Male 11.2
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 10.9
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 10.9
Sample D Male 10.8
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.4
Sample A Female 13.4
Sample B Female 11.5
Sample C Male 10.4
Sample D Male 11.7
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.7
Sample A Female 15.3
Sample B Female 14.0
Sample C Male 13.3
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 32.2
Min nTPM: 30.5
Sample A Male 32.2
Sample B Male 30.5
Sample C Female 30.7
Sample D Female 32.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.