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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA:18.8 nTPM
GTEx:10.6 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:1.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.6
1781 Male, age 74, unknown 18.2
1854 Male, age 80, left hemisphere 12.9
1857 Female, age 85, left hemisphere 11.9
2289 Male, age 61, right hemisphere 10.2
2846 Female, age 79, unknown 10.1
2290 Female, age 72, unknown 8.1
2481 Female, age 94, left hemisphere 8.0
2288 Male, age 75, left hemisphere 5.5
Claustrum
nTPM: 16.8
2645 Female, age 72, unknown 26.2
2292 Female, age 85, both hemispheres 21.1
2196 Female, age 79, unknown 18.7
1956 Male, age 74, unknown 15.7
2284 Female, age 91, both hemispheres 15.5
2198 Male, age 80, both hemispheres 14.9
2392 Female, age 94, both hemispheres 14.0
2491 Male, age 75, both hemispheres 13.2
2568 Male, age 61, both hemispheres 11.6
Globus pallidus, externus
nTPM: 14.5
2395 Male, age 75, both hemispheres 20.9
2567 Female, age 72, unknown 17.0
2772 Female, age 79, unknown 13.1
1996 Male, age 80, right hemisphere 12.8
2646 Male, age 61, right hemisphere 8.8
Globus pallidus, internus
nTPM: 14.3
2566 Female, age 72, unknown 18.7
2111 Female, age 85, right hemisphere 18.3
2037 Male, age 80, right hemisphere 16.6
2778 Female, age 91, both hemispheres 15.3
2483 Female, age 94, right hemisphere 13.4
1818 Male, age 74, unknown 12.3
2287 Male, age 75, right hemisphere 5.6
Nucleus accumbens
nTPM: 9.8
2732 Male, age 80, right hemisphere 15.2
1856 Female, age 91, right hemisphere 14.3
1806 Female, age 85, left hemisphere 10.5
1783 Male, age 74, unknown 10.2
2698 Female, age 72, unknown 8.4
2391 Female, age 94, left hemisphere 7.3
2824 Male, age 61, right hemisphere 7.1
2286 Male, age 75, left hemisphere 5.3
Nucleus basalis of Meynert
nTPM: 14.5
2484 Female, age 94, left hemisphere 16.9
2821 Male, age 75, both hemispheres 15.6
2393 Male, age 80, right hemisphere 15.3
2569 Male, age 61, both hemispheres 10.2
Nucleus of the diagonal band
nTPM: 16.6
2029 Male, age 61, right hemisphere 22.7
2195 Female, age 85, both hemispheres 21.1
1812 Female, age 91, both hemispheres 16.2
2775 Male, age 80, right hemisphere 15.6
1979 Male, age 74, unknown 7.5
Olfactory tubercle
nTPM: 17.1
1998 Female, age 91, both hemispheres 21.7
2487 Female, age 94, left hemisphere 19.0
1846 Male, age 80, right hemisphere 14.4
2856 Male, age 75, right hemisphere 13.5
Putamen
nTPM: 11.7
1937 Female, age 91, right hemisphere 14.7
2489 Female, age 72, unknown 14.7
2482 Female, age 94, left hemisphere 11.4
1838 Male, age 80, right hemisphere 11.0
2466 Female, age 79, unknown 10.8
1829 Male, age 74, unknown 10.6
2647 Male, age 75, left hemisphere 8.6
Septal nuclei
nTPM: 18.8
1960 Male, age 74, unknown 22.9
2031 Female, age 72, unknown 22.2
2394 Male, age 61, left hemisphere 20.7
2059 Female, age 85, both hemispheres 20.5
2009 Female, age 91, both hemispheres 19.2
2199 Male, age 80, right hemisphere 14.7
2629 Female, age 94, right hemisphere 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 34.4
Min nTPM: 1.3
Std nTPM: 5.5
Median nTPM: 8.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 34.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 32.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 31.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 26.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 26.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 26.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 23.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 22.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 21.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 21.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 35.2
Min nTPM: 2.7
Std nTPM: 6.1
Median nTPM: 8.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 35.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 30.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 30.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 30.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 29.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 29.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 28.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 26.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 26.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 25.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 24.7
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Brain - Putamen (basal ganglia)
Average nTPM: 9.5
Samples: 205

Max nTPM: 27.1
Min nTPM: 2.1
Std nTPM: 4.3
Median nTPM: 8.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 27.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 23.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 21.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 21.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 21.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 21.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 19.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 19.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 18.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 18.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 18.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.8
FF:10164-103B2 76 years, female 32.8
Globus pallidus
Scaled Tags Per Million: 49.9
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 48.6
Nucleus accumbens
Scaled Tags Per Million: 28.2
FF:10037-101F1 23-56 years, mixed 28.2
Putamen
Scaled Tags Per Million: 37.1
FF:10176-103C5 60 years, female 37.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Caudate
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 2.6
Sample C Male 2.2
Sample D Male 2.7
Putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 2.5
Sample C Male 2.5
Sample D Male 3.3
Septum
nTPM: 3.7
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.9
Sample A Female 3.7
Sample B Female 3.0
Sample C Male 5.0
Sample D Male 2.9
Ventral pallidum
nTPM: 2.9
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Female 2.6
Sample B Female 2.5
Sample C Male 3.7
Sample D Male 2.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.0
Sample A Male 1.1
Sample B Male 1.0
Sample C Female 1.0
Sample D Female 1.7
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.7
Sample C Female 0.3
Sample D Female 0.8
Ventral forebrain
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Male 0.9
Sample B Male 0.6
Sample C Female 0.7
Sample D Female 0.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69671678 Antisense, RP_050428_02_A10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
69671678 Antisense, RP_050428_02_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.