ABOUTMENU
HELP
NEWS
DMAC2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA:31.4 nTPM
GTEx:25.8 nTPM
FANTOM5:10.5 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:41.0 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.6
2586 Male, age 75, left hemisphere 32.7
2019 Male, age 18, unknown 31.4
2411 Female, age 72, unknown 30.8
2666 Male, age 74, left hemisphere 30.6
2828 Female, age 72, unknown 30.1
1827 Male, age 72, unknown 29.7
1833 Male, age 53, unknown 28.2
1870 Female, age 42, unknown 28.0
1830 Male, age 51, unknown 27.5
2219 Male, age 76, both hemispheres 27.1
Dorsal raphe nucleus
nTPM: 28.8
2047 Male, age 72, unknown 29.9
1828 Male, age 53, unknown 29.6
2750 Male, age 76, both hemispheres 29.2
2298 Female, age 72, unknown 28.6
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 27.7
2097 Female, age 72, unknown 28.8
1890 Male, age 53, unknown 28.6
1848 Female, age 42, unknown 27.5
2849 Male, age 72, unknown 26.0
Median raphe nucleus
nTPM: 29.1
2220 Male, age 76, midline 29.1
Pedunculopontine tegmental nucleus
nTPM: 28.5
2334 Male, age 80, both hemispheres 29.2
1921 Female, age 85, both hemispheres 28.2
2338 Male, age 61, both hemispheres 28.2
Periaquaductal grey, anterior
nTPM: 28.3
1795 Male, age 51, unknown 28.8
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 26.9
1840 Male, age 53, unknown 27.5
1831 Male, age 72, unknown 27.3
2464 Female, age 72, unknown 27.1
2850 Male, age 76, both hemispheres 25.9
Periaquaductal grey, lateral
nTPM: 26.3
2053 Male, age 18, unknown 27.2
2140 Male, age 76, both hemispheres 26.4
2272 Male, age 74, both hemispheres 25.3
Pretectal area
nTPM: 29.1
2007 Male, age 72, unknown 33.7
1816 Male, age 51, unknown 32.2
1817 Female, age 42, unknown 32.0
1944 Female, age 72, unknown 31.0
1815 Male, age 53, unknown 30.1
2667 Female, age 75, unknown 29.2
2407 Male, age 75, both hemispheres 27.2
2224 Female, age 72, unknown 26.8
2316 Male, age 76, right hemisphere 26.4
2825 Male, age 18, unknown 26.4
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 29.6
2785 Male, age 18, unknown 32.6
2588 Male, age 74, left hemisphere 30.9
2584 Male, age 75, left hemisphere 30.6
2227 Male, age 72, unknown 30.1
1821 Female, age 72, unknown 29.8
1865 Male, age 51, unknown 29.4
2725 Female, age 75, unknown 29.3
2503 Female, age 72, unknown 29.1
1904 Male, age 53, unknown 28.9
2769 Male, age 72, unknown 28.8
1954 Female, age 42, unknown 28.1
2823 Male, age 76, right hemisphere 28.1
Substantia nigra
nTPM: 31.4
1916 Female, age 42, unknown 36.0
1851 Male, age 51, unknown 33.0
2665 Male, age 74, both hemispheres 33.0
1941 Male, age 53, unknown 31.4
1889 Female, age 72, unknown 31.3
2409 Female, age 72, unknown 30.9
2583 Male, age 75, right hemisphere 30.6
2241 Male, age 72, unknown 29.5
2590 Female, age 75, unknown 29.2
2699 Male, age 18, unknown 28.9
Superior colliculus
nTPM: 29.0
2087 Female, age 72, unknown 30.8
2668 Female, age 75, unknown 30.5
1796 Male, age 53, unknown 29.6
2261 Male, age 18, unknown 29.3
2587 Male, age 74, left hemisphere 29.1
1913 Female, age 42, unknown 28.8
2664 Male, age 75, both hemispheres 28.8
1895 Male, age 76, right hemisphere 28.7
1839 Male, age 51, unknown 27.3
1995 Male, age 72, unknown 27.3
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 33.5
2218 Male, age 76, both hemispheres 31.0
1915 Female, age 42, unknown 30.8
1942 Male, age 51, unknown 29.1
2223 Female, age 72, unknown 29.1
2021 Male, age 53, unknown 27.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.8
Samples: 139

Max nTPM: 42.4
Min nTPM: 15.1
Std nTPM: 4.9
Median nTPM: 25.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 37.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 36.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 33.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 33.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 32.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.5
FF:10158-103A5 76 years, female 10.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 25.7
Sample A Female 36.4
Sample B Female 25.7
Sample C Male 37.2
Sample D Male 26.2
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 23.6
Min nTPM: 21.3
Sample B Female 23.3
Sample C Male 23.6
Sample D Male 21.3
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 31.7
Min nTPM: 23.1
Sample A Female 27.1
Sample B Female 23.1
Sample C Male 26.9
Sample D Male 31.7
Superior colliculi
nTPM: 31.2
Samples: 4

Max nTPM: 39.4
Min nTPM: 27.5
Sample A Female 28.6
Sample B Female 27.5
Sample C Male 39.4
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 42.1
Min nTPM: 39.8
Sample A Male 42.1
Sample B Male 41.7
Sample C Female 40.6
Sample D Female 39.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
75774634 Antisense, RP_060530_01_A11, Mouse strain C57BL/6J (56 days, male) 3.9
75773705 Antisense, RP_060530_01_A11, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.