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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.4 nTPM
HPA:71.4 nTPM
GTEx:44.9 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:2.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.6
2586 Male, age 75, left hemisphere 73.9
2411 Female, age 72, unknown 72.1
1830 Male, age 51, unknown 71.0
1833 Male, age 53, unknown 70.6
2019 Male, age 18, unknown 70.6
1870 Female, age 42, unknown 70.4
2828 Female, age 72, unknown 70.2
2219 Male, age 76, both hemispheres 70.0
2666 Male, age 74, left hemisphere 69.0
1827 Male, age 72, unknown 68.6
Dorsal raphe nucleus
nTPM: 69.9
2750 Male, age 76, both hemispheres 70.8
2016 Female, age 72, unknown 70.5
2047 Male, age 72, unknown 69.7
2298 Female, age 72, unknown 69.6
1828 Male, age 53, unknown 69.1
Inferior colliculus
nTPM: 68.4
1890 Male, age 53, unknown 69.6
1848 Female, age 42, unknown 68.7
2849 Male, age 72, unknown 68.5
2097 Female, age 72, unknown 66.7
Median raphe nucleus
nTPM: 67.2
2220 Male, age 76, midline 67.2
Pedunculopontine tegmental nucleus
nTPM: 68.7
2338 Male, age 61, both hemispheres 69.8
2334 Male, age 80, both hemispheres 68.5
1921 Female, age 85, both hemispheres 67.8
Periaquaductal grey, anterior
nTPM: 69.0
1947 Male, age 18, unknown 69.3
2502 Female, age 75, unknown 69.0
1795 Male, age 51, unknown 68.8
Periaquaductal grey, dorsal
nTPM: 68.7
2464 Female, age 72, unknown 70.9
1831 Male, age 72, unknown 68.8
1840 Male, age 53, unknown 67.7
2850 Male, age 76, both hemispheres 67.3
Periaquaductal grey, lateral
nTPM: 69.6
2272 Male, age 74, both hemispheres 70.8
2053 Male, age 18, unknown 69.6
2140 Male, age 76, both hemispheres 68.4
Pretectal area
nTPM: 68.8
2316 Male, age 76, right hemisphere 71.4
2407 Male, age 75, both hemispheres 71.1
2667 Female, age 75, unknown 69.6
2273 Male, age 74, both hemispheres 69.5
1815 Male, age 53, unknown 69.1
2007 Male, age 72, unknown 68.5
2825 Male, age 18, unknown 68.4
2224 Female, age 72, unknown 68.2
1817 Female, age 42, unknown 67.9
1944 Female, age 72, unknown 67.1
1816 Male, age 51, unknown 65.8
Red nucleus
nTPM: 71.4
2769 Male, age 72, unknown 73.8
1865 Male, age 51, unknown 73.5
2227 Male, age 72, unknown 73.2
1904 Male, age 53, unknown 73.1
2588 Male, age 74, left hemisphere 71.9
2823 Male, age 76, right hemisphere 71.9
2785 Male, age 18, unknown 71.1
2584 Male, age 75, left hemisphere 70.4
2503 Female, age 72, unknown 70.3
1954 Female, age 42, unknown 69.9
2725 Female, age 75, unknown 69.3
1821 Female, age 72, unknown 68.1
Substantia nigra
nTPM: 69.2
2583 Male, age 75, right hemisphere 71.8
2590 Female, age 75, unknown 71.3
1851 Male, age 51, unknown 70.3
2665 Male, age 74, both hemispheres 70.3
2409 Female, age 72, unknown 70.0
2699 Male, age 18, unknown 70.0
1889 Female, age 72, unknown 68.2
1916 Female, age 42, unknown 68.0
1941 Male, age 53, unknown 66.7
2241 Male, age 72, unknown 65.7
Superior colliculus
nTPM: 69.7
1995 Male, age 72, unknown 72.2
1913 Female, age 42, unknown 72.0
2664 Male, age 75, both hemispheres 70.7
1796 Male, age 53, unknown 69.8
1839 Male, age 51, unknown 69.7
2087 Female, age 72, unknown 68.9
2261 Male, age 18, unknown 68.8
2668 Female, age 75, unknown 68.7
2587 Male, age 74, left hemisphere 68.5
1895 Male, age 76, right hemisphere 68.2
Ventral tegmental area
nTPM: 69.2
2021 Male, age 53, unknown 70.3
2410 Female, age 72, unknown 70.0
2223 Female, age 72, unknown 69.8
1942 Male, age 51, unknown 69.5
1915 Female, age 42, unknown 68.0
2218 Male, age 76, both hemispheres 67.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.9
Samples: 139

Max nTPM: 98.3
Min nTPM: 18.6
Std nTPM: 12.6
Median nTPM: 43.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 98.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 83.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 74.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 74.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 73.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 63.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 62.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 61.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 59.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 13.8
Min nTPM: 9.4
Sample A Female 13.8
Sample B Female 12.3
Sample C Male 9.4
Sample D Male 10.4
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.0
Sample B Female 11.4
Sample C Male 12.7
Sample D Male 11.0
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 13.6
Sample C Male 12.3
Sample D Male 14.6
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 11.6
Sample C Male 9.6
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.2
Sample A Male 3.1
Sample B Male 2.2
Sample C Female 2.7
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70192171 Antisense, RP_050517_01_D06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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