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CNFN
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:4.2 nTPM
HPA:4.2 nTPM
GTEx:15.9 nTPM
FANTOM5:0.6 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:0.1 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049073
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.2
2846 Female, age 79, unknown 6.1
1857 Female, age 85, left hemisphere 5.4
2290 Female, age 72, unknown 4.6
1854 Male, age 80, left hemisphere 4.2
1781 Male, age 74, unknown 3.6
2289 Male, age 61, right hemisphere 3.6
2288 Male, age 75, left hemisphere 3.5
2481 Female, age 94, left hemisphere 2.2
Claustrum
nTPM: 1.6
2196 Female, age 79, unknown 1.9
1956 Male, age 74, unknown 1.8
2284 Female, age 91, both hemispheres 1.7
2198 Male, age 80, both hemispheres 1.6
2392 Female, age 94, both hemispheres 1.6
2568 Male, age 61, both hemispheres 1.6
2491 Male, age 75, both hemispheres 1.5
2292 Female, age 85, both hemispheres 1.4
2645 Female, age 72, unknown 1.2
Globus pallidus, externus
nTPM: 2.6
1996 Male, age 80, right hemisphere 3.0
2395 Male, age 75, both hemispheres 2.8
2772 Female, age 79, unknown 2.6
2567 Female, age 72, unknown 2.3
2646 Male, age 61, right hemisphere 2.1
Globus pallidus, internus
nTPM: 2.2
2037 Male, age 80, right hemisphere 3.1
2287 Male, age 75, right hemisphere 2.6
1818 Male, age 74, unknown 2.4
2566 Female, age 72, unknown 2.0
2778 Female, age 91, both hemispheres 2.0
2483 Female, age 94, right hemisphere 1.8
2111 Female, age 85, right hemisphere 1.5
Nucleus accumbens
nTPM: 3.2
1806 Female, age 85, left hemisphere 5.2
2286 Male, age 75, left hemisphere 3.9
2698 Female, age 72, unknown 3.7
1783 Male, age 74, unknown 3.6
2824 Male, age 61, right hemisphere 2.8
1856 Female, age 91, right hemisphere 2.7
2391 Female, age 94, left hemisphere 2.2
2732 Male, age 80, right hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 3.1
2393 Male, age 80, right hemisphere 3.9
2484 Female, age 94, left hemisphere 3.4
2821 Male, age 75, both hemispheres 2.8
2569 Male, age 61, both hemispheres 2.3
Nucleus of the diagonal band
nTPM: 1.5
1812 Female, age 91, both hemispheres 1.7
2029 Male, age 61, right hemisphere 1.5
2195 Female, age 85, both hemispheres 1.5
2775 Male, age 80, right hemisphere 1.4
1979 Male, age 74, unknown 1.2
Olfactory tubercle
nTPM: 1.4
1998 Female, age 91, both hemispheres 1.5
2856 Male, age 75, right hemisphere 1.5
2487 Female, age 94, left hemisphere 1.4
1846 Male, age 80, right hemisphere 1.3
Putamen
nTPM: 4.0
2466 Female, age 79, unknown 5.3
1838 Male, age 80, right hemisphere 4.9
1829 Male, age 74, unknown 4.7
2489 Female, age 72, unknown 4.2
1937 Female, age 91, right hemisphere 3.9
2647 Male, age 75, left hemisphere 2.9
2482 Female, age 94, left hemisphere 2.4
Septal nuclei
nTPM: 1.5
1960 Male, age 74, unknown 1.7
2059 Female, age 85, both hemispheres 1.6
2394 Male, age 61, left hemisphere 1.6
2009 Female, age 91, both hemispheres 1.4
2031 Female, age 72, unknown 1.3
2199 Male, age 80, right hemisphere 1.3
2629 Female, age 94, right hemisphere 1.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.3
Samples: 246

Max nTPM: 47.7
Min nTPM: 0.3
Std nTPM: 8.3
Median nTPM: 14.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 46.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 42.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 41.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 38.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 37.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 34.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 31.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 31.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.3
Samples: 246

Max nTPM: 33.2
Min nTPM: 0.5
Std nTPM: 5.3
Median nTPM: 8.4
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 33.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 32.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 30.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 24.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 23.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 23.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 23.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 21.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 21.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 21.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 19.9
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Brain - Putamen (basal ganglia)
Average nTPM: 15.9
Samples: 205

Max nTPM: 42.7
Min nTPM: 1.6
Std nTPM: 8.3
Median nTPM: 15.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 40.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 37.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 34.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 33.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 32.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 32.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 32.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 30.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 30.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.4
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.1
Sample D Male 0.4
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 0.6
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.9
Sample C Male 0.6
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.5
Sample D Female 0.0
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.3
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
100146167 Antisense, RP_110421_02_D02, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.5
100146167 Antisense, RP_110421_02_D02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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