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PLPPR2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:81.0 nTPM
FANTOM5:135.4 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:72.6 nTPM
Allen mouse:12.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA048973
Glial cells Low
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.3
1857 Female, age 85, left hemisphere 52.5
2290 Female, age 72, unknown 44.2
1854 Male, age 80, left hemisphere 43.9
1781 Male, age 74, unknown 42.5
2289 Male, age 61, right hemisphere 40.1
2846 Female, age 79, unknown 36.1
2288 Male, age 75, left hemisphere 34.0
2481 Female, age 94, left hemisphere 29.6
Claustrum
nTPM: 49.6
2645 Female, age 72, unknown 59.1
2568 Male, age 61, both hemispheres 55.3
2196 Female, age 79, unknown 51.3
2284 Female, age 91, both hemispheres 51.3
2198 Male, age 80, both hemispheres 50.8
2491 Male, age 75, both hemispheres 49.9
2292 Female, age 85, both hemispheres 46.5
1956 Male, age 74, unknown 42.5
2392 Female, age 94, both hemispheres 39.8
Globus pallidus, externus
nTPM: 28.5
2646 Male, age 61, right hemisphere 35.6
2567 Female, age 72, unknown 30.7
2395 Male, age 75, both hemispheres 26.6
2772 Female, age 79, unknown 26.2
1996 Male, age 80, right hemisphere 23.7
Globus pallidus, internus
nTPM: 25.8
2566 Female, age 72, unknown 31.4
2483 Female, age 94, right hemisphere 29.5
2037 Male, age 80, right hemisphere 25.0
2778 Female, age 91, both hemispheres 24.4
2111 Female, age 85, right hemisphere 24.3
1818 Male, age 74, unknown 23.9
2287 Male, age 75, right hemisphere 22.4
Nucleus accumbens
nTPM: 47.3
1856 Female, age 91, right hemisphere 56.2
1783 Male, age 74, unknown 56.0
1806 Female, age 85, left hemisphere 56.0
2824 Male, age 61, right hemisphere 52.4
2698 Female, age 72, unknown 48.4
2732 Male, age 80, right hemisphere 44.9
2286 Male, age 75, left hemisphere 36.5
2391 Female, age 94, left hemisphere 27.7
Nucleus basalis of Meynert
nTPM: 36.0
2569 Male, age 61, both hemispheres 40.7
2821 Male, age 75, both hemispheres 36.1
2484 Female, age 94, left hemisphere 34.7
2393 Male, age 80, right hemisphere 32.5
Nucleus of the diagonal band
nTPM: 62.7
2195 Female, age 85, both hemispheres 75.6
1979 Male, age 74, unknown 63.8
2775 Male, age 80, right hemisphere 62.3
2029 Male, age 61, right hemisphere 56.5
1812 Female, age 91, both hemispheres 55.2
Olfactory tubercle
nTPM: 56.3
2487 Female, age 94, left hemisphere 65.9
1846 Male, age 80, right hemisphere 55.0
1998 Female, age 91, both hemispheres 52.4
2856 Male, age 75, right hemisphere 51.9
Putamen
nTPM: 37.4
1838 Male, age 80, right hemisphere 45.5
2647 Male, age 75, left hemisphere 44.2
1937 Female, age 91, right hemisphere 41.0
2489 Female, age 72, unknown 33.8
1829 Male, age 74, unknown 33.6
2466 Female, age 79, unknown 33.6
2482 Female, age 94, left hemisphere 30.0
Septal nuclei
nTPM: 55.9
1960 Male, age 74, unknown 78.8
2059 Female, age 85, both hemispheres 66.5
2629 Female, age 94, right hemisphere 56.8
2031 Female, age 72, unknown 53.3
2009 Female, age 91, both hemispheres 48.5
2394 Male, age 61, left hemisphere 44.8
2199 Male, age 80, right hemisphere 42.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 81.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.0
Samples: 246

Max nTPM: 81.8
Min nTPM: 21.6
Std nTPM: 10.1
Median nTPM: 50.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 81.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 78.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 77.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 77.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 75.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 70.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 69.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 69.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 69.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 68.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 68.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 81.0
Samples: 246

Max nTPM: 141.5
Min nTPM: 24.9
Std nTPM: 21.7
Median nTPM: 81.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 141.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 137.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 135.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 128.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 125.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 124.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 122.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 122.1
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 121.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 120.1
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 117.8
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Brain - Putamen (basal ganglia)
Average nTPM: 48.7
Samples: 205

Max nTPM: 83.9
Min nTPM: 29.2
Std nTPM: 11.0
Median nTPM: 46.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 83.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 82.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 81.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 79.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 77.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 76.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 76.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 73.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 71.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 70.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 70.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.4
FF:10164-103B2 76 years, female 95.4
Globus pallidus
Scaled Tags Per Million: 32.0
FF:10175-103C4 60 years, female 35.5
FF:10161-103A8 76 years, female 28.5
Nucleus accumbens
Scaled Tags Per Million: 117.5
FF:10037-101F1 23-56 years, mixed 117.5
Putamen
Scaled Tags Per Million: 135.4
FF:10176-103C5 60 years, female 135.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Caudate
nTPM: 3.1
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.9
Sample A Female 3.1
Sample B Female 3.3
Sample C Male 3.1
Sample D Male 2.9
Putamen
nTPM: 3.0
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.6
Sample A Female 3.0
Sample B Female 3.4
Sample C Male 2.6
Sample D Male 2.9
Septum
nTPM: 3.7
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.4
Sample A Female 3.6
Sample B Female 3.8
Sample C Male 3.4
Sample D Male 3.9
Ventral pallidum
nTPM: 3.4
Samples: 4

Max nTPM: 3.5
Min nTPM: 3.3
Sample A Female 3.5
Sample B Female 3.3
Sample C Male 3.5
Sample D Male 3.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.5
Samples: 4

Max nTPM: 60.6
Min nTPM: 51.6
Sample A Male 51.6
Sample B Male 60.6
Sample C Female 53.1
Sample D Female 60.6
Septum
nTPM: 66.4
Samples: 4

Max nTPM: 74.0
Min nTPM: 55.3
Sample A Male 74.0
Sample B Male 68.8
Sample C Female 67.5
Sample D Female 55.3
Ventral forebrain
nTPM: 72.6
Samples: 4

Max nTPM: 86.5
Min nTPM: 63.0
Sample A Male 73.9
Sample B Male 63.0
Sample C Female 86.5
Sample D Female 66.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.6
71836832 Antisense, RP_051017_02_B07, Mouse strain C57BL/6J (56 days, male) 13.6
67765715 Antisense, RP_040916_01_E10, Mouse strain C57BL/6J (56 days, male) 11.5
Pallidum
Expression energy: 12.5
71836832 Antisense, RP_051017_02_B07, Mouse strain C57BL/6J (56 days, male) 13.4
67765715 Antisense, RP_040916_01_E10, Mouse strain C57BL/6J (56 days, male) 11.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.