ABOUTMENU
HELP
NEWS
MIER2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:14.3 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:8.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2586 Male, age 75, left hemisphere 16.4
2666 Male, age 74, left hemisphere 14.3
2828 Female, age 72, unknown 12.8
2019 Male, age 18, unknown 12.4
1833 Male, age 53, unknown 12.1
1870 Female, age 42, unknown 11.8
1830 Male, age 51, unknown 11.6
2411 Female, age 72, unknown 11.5
2219 Male, age 76, both hemispheres 11.3
1827 Male, age 72, unknown 10.9
Dorsal raphe nucleus
nTPM: 10.5
1828 Male, age 53, unknown 11.4
2047 Male, age 72, unknown 11.1
2750 Male, age 76, both hemispheres 10.9
2016 Female, age 72, unknown 10.0
2298 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 10.8
2849 Male, age 72, unknown 11.4
1890 Male, age 53, unknown 11.2
1848 Female, age 42, unknown 10.5
2097 Female, age 72, unknown 10.2
Median raphe nucleus
nTPM: 11.2
2220 Male, age 76, midline 11.2
Pedunculopontine tegmental nucleus
nTPM: 10.5
2334 Male, age 80, both hemispheres 11.3
2338 Male, age 61, both hemispheres 10.8
1921 Female, age 85, both hemispheres 9.5
Periaquaductal grey, anterior
nTPM: 12.0
2502 Female, age 75, unknown 12.7
1947 Male, age 18, unknown 11.7
1795 Male, age 51, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 10.5
1831 Male, age 72, unknown 11.0
2850 Male, age 76, both hemispheres 10.8
2464 Female, age 72, unknown 10.3
1840 Male, age 53, unknown 9.9
Periaquaductal grey, lateral
nTPM: 10.3
2053 Male, age 18, unknown 10.6
2140 Male, age 76, both hemispheres 10.5
2272 Male, age 74, both hemispheres 9.7
Pretectal area
nTPM: 11.0
1817 Female, age 42, unknown 12.0
2007 Male, age 72, unknown 12.0
1815 Male, age 53, unknown 11.7
2407 Male, age 75, both hemispheres 11.7
1816 Male, age 51, unknown 11.5
2316 Male, age 76, right hemisphere 11.2
2667 Female, age 75, unknown 11.2
2825 Male, age 18, unknown 11.0
1944 Female, age 72, unknown 10.8
2224 Female, age 72, unknown 9.5
2273 Male, age 74, both hemispheres 7.9
Red nucleus
nTPM: 13.0
2588 Male, age 74, left hemisphere 16.0
2584 Male, age 75, left hemisphere 15.2
2769 Male, age 72, unknown 13.3
2227 Male, age 72, unknown 13.2
1904 Male, age 53, unknown 13.0
2785 Male, age 18, unknown 12.9
1865 Male, age 51, unknown 12.7
1954 Female, age 42, unknown 12.7
2823 Male, age 76, right hemisphere 12.7
2503 Female, age 72, unknown 11.5
1821 Female, age 72, unknown 11.2
2725 Female, age 75, unknown 11.1
Substantia nigra
nTPM: 11.2
2665 Male, age 74, both hemispheres 13.2
2583 Male, age 75, right hemisphere 12.8
1851 Male, age 51, unknown 12.0
1916 Female, age 42, unknown 11.8
1889 Female, age 72, unknown 11.7
2699 Male, age 18, unknown 10.9
1941 Male, age 53, unknown 10.8
2590 Female, age 75, unknown 10.6
2241 Male, age 72, unknown 9.6
2409 Female, age 72, unknown 8.7
Superior colliculus
nTPM: 11.4
2664 Male, age 75, both hemispheres 13.5
2668 Female, age 75, unknown 12.7
2587 Male, age 74, left hemisphere 11.5
2261 Male, age 18, unknown 11.3
1796 Male, age 53, unknown 11.1
1913 Female, age 42, unknown 11.1
1995 Male, age 72, unknown 11.0
2087 Female, age 72, unknown 10.8
1839 Male, age 51, unknown 10.6
1895 Male, age 76, right hemisphere 10.4
Ventral tegmental area
nTPM: 11.4
2218 Male, age 76, both hemispheres 12.1
1942 Male, age 51, unknown 12.0
2223 Female, age 72, unknown 12.0
2410 Female, age 72, unknown 10.9
1915 Female, age 42, unknown 10.7
2021 Male, age 53, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.3
Samples: 139

Max nTPM: 40.3
Min nTPM: 4.4
Std nTPM: 4.4
Median nTPM: 13.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 24.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 22.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 22.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 21.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 21.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 20.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.3
Sample A Female 10.8
Sample B Female 8.3
Sample C Male 9.2
Sample D Male 9.2
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 7.3
Min nTPM: 6.9
Sample B Female 6.9
Sample C Male 6.9
Sample D Male 7.3
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 10.7
Min nTPM: 7.3
Sample A Female 8.9
Sample B Female 7.3
Sample C Male 9.4
Sample D Male 10.7
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.9
Sample A Female 8.8
Sample B Female 7.9
Sample C Male 9.0
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.3
Sample A Male 9.1
Sample B Male 7.3
Sample C Female 9.6
Sample D Female 9.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
393264 Antisense, RP_040809_01_B06, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.