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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:92.8 nTPM
HPA:92.8 nTPM
GTEx:78.7 nTPM
FANTOM5:128.5 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA041507Antibody HPA041599
Glial cells LowNot detected
Neuronal cells MediumMedium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 92.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 84.2
1781 Male, age 74, unknown 88.4
2481 Female, age 94, left hemisphere 86.1
2289 Male, age 61, right hemisphere 84.5
1854 Male, age 80, left hemisphere 84.1
2290 Female, age 72, unknown 83.6
2846 Female, age 79, unknown 82.9
1857 Female, age 85, left hemisphere 82.3
2288 Male, age 75, left hemisphere 81.8
Claustrum
nTPM: 88.4
2292 Female, age 85, both hemispheres 93.8
1956 Male, age 74, unknown 91.3
2645 Female, age 72, unknown 91.3
2284 Female, age 91, both hemispheres 89.9
2196 Female, age 79, unknown 89.1
2198 Male, age 80, both hemispheres 88.4
2568 Male, age 61, both hemispheres 85.2
2491 Male, age 75, both hemispheres 84.4
2392 Female, age 94, both hemispheres 82.8
Globus pallidus, externus
nTPM: 92.8
2567 Female, age 72, unknown 97.0
1996 Male, age 80, right hemisphere 95.7
2646 Male, age 61, right hemisphere 93.0
2772 Female, age 79, unknown 90.1
2395 Male, age 75, both hemispheres 88.1
Globus pallidus, internus
nTPM: 92.6
2111 Female, age 85, right hemisphere 98.9
2778 Female, age 91, both hemispheres 94.9
2037 Male, age 80, right hemisphere 93.9
1818 Male, age 74, unknown 92.2
2566 Female, age 72, unknown 90.8
2287 Male, age 75, right hemisphere 88.9
2483 Female, age 94, right hemisphere 88.5
Nucleus accumbens
nTPM: 84.9
2391 Female, age 94, left hemisphere 90.8
2698 Female, age 72, unknown 88.8
2732 Male, age 80, right hemisphere 86.1
1806 Female, age 85, left hemisphere 85.4
1783 Male, age 74, unknown 84.6
2286 Male, age 75, left hemisphere 82.6
2824 Male, age 61, right hemisphere 80.5
1856 Female, age 91, right hemisphere 79.9
Nucleus basalis of Meynert
nTPM: 86.2
2569 Male, age 61, both hemispheres 92.6
2821 Male, age 75, both hemispheres 86.4
2484 Female, age 94, left hemisphere 83.0
2393 Male, age 80, right hemisphere 82.8
Nucleus of the diagonal band
nTPM: 82.5
2775 Male, age 80, right hemisphere 83.6
2195 Female, age 85, both hemispheres 83.0
1979 Male, age 74, unknown 82.4
1812 Female, age 91, both hemispheres 82.1
2029 Male, age 61, right hemisphere 81.1
Olfactory tubercle
nTPM: 82.3
1998 Female, age 91, both hemispheres 82.8
1846 Male, age 80, right hemisphere 82.7
2856 Male, age 75, right hemisphere 81.9
2487 Female, age 94, left hemisphere 81.8
Putamen
nTPM: 85.8
2489 Female, age 72, unknown 91.5
2482 Female, age 94, left hemisphere 89.4
2647 Male, age 75, left hemisphere 86.8
2466 Female, age 79, unknown 84.2
1829 Male, age 74, unknown 83.8
1838 Male, age 80, right hemisphere 83.3
1937 Female, age 91, right hemisphere 81.6
Septal nuclei
nTPM: 82.9
2629 Female, age 94, right hemisphere 85.5
2394 Male, age 61, left hemisphere 83.9
2059 Female, age 85, both hemispheres 83.8
1960 Male, age 74, unknown 83.6
2199 Male, age 80, right hemisphere 82.9
2009 Female, age 91, both hemispheres 80.7
2031 Female, age 72, unknown 79.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.3
Samples: 246

Max nTPM: 116.2
Min nTPM: 36.4
Std nTPM: 11.7
Median nTPM: 71.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 116.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 111.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 111.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 106.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 105.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 97.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 94.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 94.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 92.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 90.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 76.1
Samples: 246

Max nTPM: 121.4
Min nTPM: 44.4
Std nTPM: 13.7
Median nTPM: 74.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 121.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 120.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 116.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 111.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 109.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 106.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 105.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 105.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 104.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 104.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 104.3
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Brain - Putamen (basal ganglia)
Average nTPM: 78.7
Samples: 205

Max nTPM: 108.1
Min nTPM: 46.5
Std nTPM: 11.5
Median nTPM: 78.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 108.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 106.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 106.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 105.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 103.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 103.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 101.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 101.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 100.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 100.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 99.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.7
FF:10164-103B2 76 years, female 100.7
Globus pallidus
Scaled Tags Per Million: 128.5
FF:10175-103C4 60 years, female 143.6
FF:10161-103A8 76 years, female 113.4
Nucleus accumbens
Scaled Tags Per Million: 119.5
FF:10037-101F1 23-56 years, mixed 119.5
Putamen
Scaled Tags Per Million: 96.2
FF:10176-103C5 60 years, female 96.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.