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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.0 nTPM
HPA:53.0 nTPM
GTEx:88.8 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:226.5 nTPM
Allen mouse:16.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.5
1781 Male, age 74, unknown 51.0
2288 Male, age 75, left hemisphere 48.2
2846 Female, age 79, unknown 39.7
2290 Female, age 72, unknown 33.5
1857 Female, age 85, left hemisphere 32.2
2289 Male, age 61, right hemisphere 31.7
1854 Male, age 80, left hemisphere 29.2
2481 Female, age 94, left hemisphere 26.6
Claustrum
nTPM: 30.2
2645 Female, age 72, unknown 40.9
2568 Male, age 61, both hemispheres 40.4
2284 Female, age 91, both hemispheres 36.7
2198 Male, age 80, both hemispheres 33.3
2491 Male, age 75, both hemispheres 32.7
1956 Male, age 74, unknown 24.2
2392 Female, age 94, both hemispheres 22.4
2196 Female, age 79, unknown 20.8
2292 Female, age 85, both hemispheres 20.2
Globus pallidus, externus
nTPM: 53.0
2772 Female, age 79, unknown 85.5
2567 Female, age 72, unknown 61.9
1996 Male, age 80, right hemisphere 47.6
2395 Male, age 75, both hemispheres 43.1
2646 Male, age 61, right hemisphere 26.9
Globus pallidus, internus
nTPM: 46.6
1818 Male, age 74, unknown 74.4
2037 Male, age 80, right hemisphere 58.0
2287 Male, age 75, right hemisphere 48.8
2566 Female, age 72, unknown 43.3
2778 Female, age 91, both hemispheres 37.9
2111 Female, age 85, right hemisphere 32.5
2483 Female, age 94, right hemisphere 31.7
Nucleus accumbens
nTPM: 25.0
2286 Male, age 75, left hemisphere 40.6
1783 Male, age 74, unknown 28.1
1806 Female, age 85, left hemisphere 26.7
2824 Male, age 61, right hemisphere 26.1
1856 Female, age 91, right hemisphere 23.8
2391 Female, age 94, left hemisphere 22.3
2698 Female, age 72, unknown 19.4
2732 Male, age 80, right hemisphere 13.4
Nucleus basalis of Meynert
nTPM: 35.2
2484 Female, age 94, left hemisphere 41.9
2821 Male, age 75, both hemispheres 39.6
2393 Male, age 80, right hemisphere 33.4
2569 Male, age 61, both hemispheres 25.8
Nucleus of the diagonal band
nTPM: 15.1
2029 Male, age 61, right hemisphere 22.7
1812 Female, age 91, both hemispheres 18.3
2195 Female, age 85, both hemispheres 15.3
2775 Male, age 80, right hemisphere 14.9
1979 Male, age 74, unknown 4.3
Olfactory tubercle
nTPM: 26.5
2856 Male, age 75, right hemisphere 42.1
1998 Female, age 91, both hemispheres 32.1
1846 Male, age 80, right hemisphere 16.3
2487 Female, age 94, left hemisphere 15.5
Putamen
nTPM: 40.1
2647 Male, age 75, left hemisphere 62.8
2489 Female, age 72, unknown 41.1
1829 Male, age 74, unknown 40.9
2466 Female, age 79, unknown 38.4
1838 Male, age 80, right hemisphere 33.0
2482 Female, age 94, left hemisphere 32.5
1937 Female, age 91, right hemisphere 31.9
Septal nuclei
nTPM: 14.3
1960 Male, age 74, unknown 19.8
2031 Female, age 72, unknown 17.0
2394 Male, age 61, left hemisphere 15.7
2629 Female, age 94, right hemisphere 14.7
2009 Female, age 91, both hemispheres 13.3
2059 Female, age 85, both hemispheres 13.2
2199 Male, age 80, right hemisphere 6.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 88.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.8
Samples: 246

Max nTPM: 199.8
Min nTPM: 16.3
Std nTPM: 29.2
Median nTPM: 73.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 199.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 181.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 167.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 150.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 137.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 136.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 136.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 134.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 128.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 127.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 126.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.2
Samples: 246

Max nTPM: 179.2
Min nTPM: 7.5
Std nTPM: 19.7
Median nTPM: 47.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 179.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 123.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 114.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 103.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 99.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 88.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 87.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 85.4
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 82.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 82.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 81.7
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Brain - Putamen (basal ganglia)
Average nTPM: 88.8
Samples: 205

Max nTPM: 170.7
Min nTPM: 29.1
Std nTPM: 27.3
Median nTPM: 88.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 170.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 157.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 153.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 151.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 144.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 144.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 138.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 138.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 138.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 136.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 135.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.6
FF:10164-103B2 76 years, female 23.6
Globus pallidus
Scaled Tags Per Million: 42.3
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 33.4
Nucleus accumbens
Scaled Tags Per Million: 87.1
FF:10037-101F1 23-56 years, mixed 87.1
Putamen
Scaled Tags Per Million: 33.9
FF:10176-103C5 60 years, female 33.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.6
Pig sample Sample description nTPM
Caudate
nTPM: 14.1
Samples: 4

Max nTPM: 22.6
Min nTPM: 11.1
Sample A Female 11.4
Sample B Female 11.1
Sample C Male 22.6
Sample D Male 11.1
Putamen
nTPM: 28.6
Samples: 4

Max nTPM: 47.5
Min nTPM: 19.2
Sample A Female 24.3
Sample B Female 19.2
Sample C Male 47.5
Sample D Male 23.5
Septum
nTPM: 6.9
Samples: 4

Max nTPM: 10.9
Min nTPM: 1.9
Sample A Female 8.5
Sample B Female 6.3
Sample C Male 10.9
Sample D Male 1.9
Ventral pallidum
nTPM: 18.5
Samples: 4

Max nTPM: 37.3
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 21.8
Sample C Male 37.3
Sample D Male 7.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 226.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 178.5
Samples: 4

Max nTPM: 198.4
Min nTPM: 166.5
Sample A Male 175.1
Sample B Male 198.4
Sample C Female 166.5
Sample D Female 173.9
Septum
nTPM: 92.0
Samples: 4

Max nTPM: 131.6
Min nTPM: 66.2
Sample A Male 131.6
Sample B Male 74.0
Sample C Female 96.1
Sample D Female 66.2
Ventral forebrain
nTPM: 226.5
Samples: 4

Max nTPM: 251.7
Min nTPM: 188.6
Sample A Male 251.7
Sample B Male 188.6
Sample C Female 247.0
Sample D Female 218.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.0
77454673 Antisense, RP_070129_01_C06, Mouse strain C57BL/6J (56 days, male) 16.0
Pallidum
Expression energy: 13.5
77454673 Antisense, RP_070129_01_C06, Mouse strain C57BL/6J (56 days, male) 13.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.