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HIBADH
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA:17.0 nTPM
GTEx:17.2 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:98.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
2019 Male, age 18, unknown 16.5
2411 Female, age 72, unknown 15.8
2828 Female, age 72, unknown 15.7
1870 Female, age 42, unknown 15.5
1830 Male, age 51, unknown 15.1
1833 Male, age 53, unknown 15.1
2666 Male, age 74, left hemisphere 15.0
2219 Male, age 76, both hemispheres 14.9
1827 Male, age 72, unknown 14.8
2586 Male, age 75, left hemisphere 12.7
Dorsal raphe nucleus
nTPM: 16.0
1828 Male, age 53, unknown 17.5
2047 Male, age 72, unknown 16.4
2298 Female, age 72, unknown 15.7
2016 Female, age 72, unknown 15.3
2750 Male, age 76, both hemispheres 15.1
Inferior colliculus
nTPM: 16.3
1890 Male, age 53, unknown 18.3
2097 Female, age 72, unknown 16.5
1848 Female, age 42, unknown 15.5
2849 Male, age 72, unknown 14.7
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 15.0
1921 Female, age 85, both hemispheres 16.6
2334 Male, age 80, both hemispheres 14.6
2338 Male, age 61, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 13.8
1947 Male, age 18, unknown 14.6
2502 Female, age 75, unknown 13.7
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 15.2
2850 Male, age 76, both hemispheres 16.1
2464 Female, age 72, unknown 15.4
1840 Male, age 53, unknown 14.6
1831 Male, age 72, unknown 14.4
Periaquaductal grey, lateral
nTPM: 14.4
2140 Male, age 76, both hemispheres 15.0
2272 Male, age 74, both hemispheres 14.5
2053 Male, age 18, unknown 13.6
Pretectal area
nTPM: 15.0
1817 Female, age 42, unknown 16.7
1944 Female, age 72, unknown 16.4
2667 Female, age 75, unknown 16.4
1815 Male, age 53, unknown 16.2
1816 Male, age 51, unknown 15.6
2007 Male, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 14.8
2316 Male, age 76, right hemisphere 14.5
2825 Male, age 18, unknown 14.2
2224 Female, age 72, unknown 13.9
2407 Male, age 75, both hemispheres 12.0
Red nucleus
nTPM: 16.5
1821 Female, age 72, unknown 20.8
2503 Female, age 72, unknown 19.4
2823 Male, age 76, right hemisphere 18.0
2227 Male, age 72, unknown 16.7
1865 Male, age 51, unknown 16.5
1954 Female, age 42, unknown 16.5
1904 Male, age 53, unknown 16.4
2725 Female, age 75, unknown 16.4
2769 Male, age 72, unknown 16.4
2785 Male, age 18, unknown 15.4
2588 Male, age 74, left hemisphere 14.4
2584 Male, age 75, left hemisphere 11.6
Substantia nigra
nTPM: 17.0
2409 Female, age 72, unknown 21.2
2699 Male, age 18, unknown 19.7
1916 Female, age 42, unknown 18.3
2241 Male, age 72, unknown 18.1
1851 Male, age 51, unknown 17.3
1889 Female, age 72, unknown 16.8
2665 Male, age 74, both hemispheres 16.3
2590 Female, age 75, unknown 15.3
1941 Male, age 53, unknown 15.0
2583 Male, age 75, right hemisphere 12.4
Superior colliculus
nTPM: 14.4
2587 Male, age 74, left hemisphere 16.3
1913 Female, age 42, unknown 15.9
1895 Male, age 76, right hemisphere 15.6
1995 Male, age 72, unknown 15.1
1839 Male, age 51, unknown 14.5
2087 Female, age 72, unknown 14.4
2668 Female, age 75, unknown 14.4
1796 Male, age 53, unknown 13.6
2261 Male, age 18, unknown 12.5
2664 Male, age 75, both hemispheres 11.4
Ventral tegmental area
nTPM: 15.8
2410 Female, age 72, unknown 18.7
1915 Female, age 42, unknown 16.7
2218 Male, age 76, both hemispheres 15.6
1942 Male, age 51, unknown 15.3
2021 Male, age 53, unknown 14.3
2223 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 38.3
Min nTPM: 7.5
Std nTPM: 5.5
Median nTPM: 15.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 38.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 34.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 30.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 29.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 29.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 28.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 27.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 26.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 26.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.8
Pig sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 58.4
Min nTPM: 46.9
Sample A Female 58.4
Sample B Female 55.5
Sample C Male 51.2
Sample D Male 46.9
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 55.4
Min nTPM: 38.6
Sample B Female 51.8
Sample C Male 55.4
Sample D Male 38.6
Substantia nigra
nTPM: 55.9
Samples: 4

Max nTPM: 74.8
Min nTPM: 42.1
Sample A Female 74.8
Sample B Female 51.5
Sample C Male 55.0
Sample D Male 42.1
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 69.7
Min nTPM: 40.3
Sample A Female 69.7
Sample B Female 40.3
Sample C Male 55.2
Sample D Male 45.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.5
Samples: 4

Max nTPM: 102.1
Min nTPM: 96.7
Sample A Male 96.7
Sample B Male 98.3
Sample C Female 96.7
Sample D Female 102.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68076536 Antisense, RP_040923_02_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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