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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:33.0 nTPM
HPA:33.0 nTPM
GTEx:18.4 nTPM
FANTOM5:129.9 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA018989
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.5
2288 Male, age 75, left hemisphere 24.7
1781 Male, age 74, unknown 21.9
1857 Female, age 85, left hemisphere 18.6
2846 Female, age 79, unknown 18.6
1854 Male, age 80, left hemisphere 17.5
2290 Female, age 72, unknown 16.7
2481 Female, age 94, left hemisphere 16.4
2289 Male, age 61, right hemisphere 14.0
Claustrum
nTPM: 26.7
1956 Male, age 74, unknown 32.8
2392 Female, age 94, both hemispheres 31.0
2292 Female, age 85, both hemispheres 29.9
2196 Female, age 79, unknown 29.7
2568 Male, age 61, both hemispheres 25.3
2198 Male, age 80, both hemispheres 24.7
2491 Male, age 75, both hemispheres 24.6
2284 Female, age 91, both hemispheres 21.7
2645 Female, age 72, unknown 20.2
Globus pallidus, externus
nTPM: 26.9
2395 Male, age 75, both hemispheres 30.6
1996 Male, age 80, right hemisphere 29.3
2772 Female, age 79, unknown 27.0
2567 Female, age 72, unknown 25.9
2646 Male, age 61, right hemisphere 21.5
Globus pallidus, internus
nTPM: 33.0
2778 Female, age 91, both hemispheres 42.4
2111 Female, age 85, right hemisphere 41.7
2287 Male, age 75, right hemisphere 39.5
2566 Female, age 72, unknown 29.7
2037 Male, age 80, right hemisphere 29.0
1818 Male, age 74, unknown 27.5
2483 Female, age 94, right hemisphere 21.1
Nucleus accumbens
nTPM: 25.5
2391 Female, age 94, left hemisphere 38.1
2698 Female, age 72, unknown 27.0
2286 Male, age 75, left hemisphere 25.5
2824 Male, age 61, right hemisphere 24.4
1783 Male, age 74, unknown 23.8
1806 Female, age 85, left hemisphere 22.9
1856 Female, age 91, right hemisphere 21.3
2732 Male, age 80, right hemisphere 21.2
Nucleus basalis of Meynert
nTPM: 19.3
2821 Male, age 75, both hemispheres 22.2
2484 Female, age 94, left hemisphere 19.4
2569 Male, age 61, both hemispheres 18.0
2393 Male, age 80, right hemisphere 17.7
Nucleus of the diagonal band
nTPM: 16.8
2029 Male, age 61, right hemisphere 20.9
1979 Male, age 74, unknown 17.2
1812 Female, age 91, both hemispheres 17.0
2195 Female, age 85, both hemispheres 14.9
2775 Male, age 80, right hemisphere 14.3
Olfactory tubercle
nTPM: 16.0
1998 Female, age 91, both hemispheres 16.4
2856 Male, age 75, right hemisphere 16.4
2487 Female, age 94, left hemisphere 15.8
1846 Male, age 80, right hemisphere 15.6
Putamen
nTPM: 20.0
1937 Female, age 91, right hemisphere 23.2
2482 Female, age 94, left hemisphere 21.7
1829 Male, age 74, unknown 20.8
1838 Male, age 80, right hemisphere 19.1
2489 Female, age 72, unknown 18.9
2647 Male, age 75, left hemisphere 18.7
2466 Female, age 79, unknown 17.6
Septal nuclei
nTPM: 17.7
2394 Male, age 61, left hemisphere 21.8
2199 Male, age 80, right hemisphere 19.6
2629 Female, age 94, right hemisphere 19.0
2031 Female, age 72, unknown 18.7
2009 Female, age 91, both hemispheres 16.2
2059 Female, age 85, both hemispheres 15.4
1960 Male, age 74, unknown 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.2
Samples: 246

Max nTPM: 42.6
Min nTPM: 3.1
Std nTPM: 5.0
Median nTPM: 11.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 42.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 36.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 31.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 23.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 23.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 21.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 21.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.4
Samples: 246

Max nTPM: 46.5
Min nTPM: 2.6
Std nTPM: 7.3
Median nTPM: 18.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 37.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 36.6
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 35.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 33.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 32.4
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 31.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 31.0
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 31.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 31.0
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 30.7
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Brain - Putamen (basal ganglia)
Average nTPM: 14.6
Samples: 205

Max nTPM: 46.7
Min nTPM: 2.5
Std nTPM: 5.6
Median nTPM: 14.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 46.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 30.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 28.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 27.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 27.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 26.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 25.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 25.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 25.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 24.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 24.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.8
FF:10164-103B2 76 years, female 48.8
Globus pallidus
Scaled Tags Per Million: 129.9
FF:10161-103A8 76 years, female 170.7
FF:10175-103C4 60 years, female 89.1
Nucleus accumbens
Scaled Tags Per Million: 56.8
FF:10037-101F1 23-56 years, mixed 56.8
Putamen
Scaled Tags Per Million: 67.5
FF:10176-103C5 60 years, female 67.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.