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STX1A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:76.1 nTPM
HPA:76.1 nTPM
GTEx:74.8 nTPM
FANTOM5:81.2 Scaled Tags Per Million
Pig:87.2 nTPM
Mouse:229.1 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA069176Antibody CAB008372
Glial cells Not detectedLow
Neuronal cells Not detectedLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 76.1
Sample id Sample description nTPM
Hippocampus
nTPM: 38.5
1898 Male, age 80, left hemisphere 45.0
1855 Male, age 76, left hemisphere 42.1
2621 Female, age 67, right hemisphere 38.3
1911 Female, age 85, right hemisphere 37.3
2148 Female, age 91, left hemisphere 36.5
2529 Female, age 94, left hemisphere 31.7
Dentate gyrus
nTPM: 37.7
2246 Female, age 85, both hemispheres 43.6
1927 Female, age 91, both hemispheres 42.0
2530 Female, age 94, left hemisphere 38.0
2010 Male, age 76, both hemispheres 36.2
2531 Female, age 67, both hemispheres 34.2
2528 Male, age 74, both hemispheres 32.2
Entorhinal gyrus
nTPM: 64.6
2613 Female, age 94, left hemisphere 91.5
2764 Male, age 80, right hemisphere 73.0
1938 Female, age 85, left hemisphere 68.9
1787 Male, age 76, left hemisphere 63.6
2686 Male, age 75, right hemisphere 61.9
2117 Female, age 91, right hemisphere 29.0
Hippocampus, CA1
nTPM: 45.8
2749 Male, age 80, left hemisphere 61.9
2082 Female, age 91, right hemisphere 49.5
1873 Female, age 85, both hemispheres 44.2
2527 Male, age 74, both hemispheres 38.2
2045 Male, age 76, both hemispheres 35.3
Hippocampus, CA2
nTPM: 43.6
1940 Female, age 85, left hemisphere 58.3
1892 Male, age 76, both hemispheres 49.3
2437 Female, age 94, left hemisphere 41.4
1963 Male, age 80, left hemisphere 41.0
2113 Female, age 91, right hemisphere 39.7
2249 Male, age 74, both hemispheres 32.0
Hippocampus, CA3
nTPM: 41.2
2137 Male, age 80, left hemisphere 65.3
2861 Female, age 67, both hemispheres 42.2
1867 Male, age 76, both hemispheres 39.9
2436 Male, age 74, both hemispheres 34.3
2620 Female, age 94, left hemisphere 34.0
1891 Female, age 85, both hemispheres 31.7
Parahippocampal cortex
nTPM: 62.2
2622 Female, age 67, right hemisphere 80.3
1850 Male, age 80, both hemispheres 78.5
2532 Female, age 72, left hemisphere 73.3
1933 Female, age 85, both hemispheres 70.1
2693 Female, age 94, both hemispheres 64.9
2245 Female, age 91, both hemispheres 60.8
1990 Female, age 91, right hemisphere 55.2
2018 Male, age 76, both hemispheres 47.1
2692 Male, age 74, both hemispheres 46.7
2250 Female, age 67, right hemisphere 45.3
Perirhinal gyrus
nTPM: 76.1
1847 Female, age 91, left hemisphere 86.1
1794 Male, age 80, right hemisphere 85.8
1841 Female, age 85, right hemisphere 76.1
2848 Male, age 76, right hemisphere 68.6
2521 Female, age 94, right hemisphere 63.7
Subiculum
nTPM: 38.7
1977 Female, age 85, both hemispheres 51.8
1901 Male, age 80, both hemispheres 42.3
2619 Male, age 74, both hemispheres 37.7
2042 Male, age 76, both hemispheres 36.8
2438 Female, age 94, left hemisphere 35.0
2729 Female, age 91, right hemisphere 28.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 74.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 74.8
Samples: 197

Max nTPM: 225.3
Min nTPM: 2.7
Std nTPM: 53.9
Median nTPM: 64.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 225.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 222.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 216.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 213.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 205.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 203.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 199.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 198.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 198.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 196.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 189.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 81.2
FF:10169-103B7 60 years, female 104.6
FF:10153-102I9 76 years, female 57.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.6
Sample A Female 21.2
Sample B Female 23.1
Sample C Male 17.5
Sample D Male 15.6
Entorhinal cortex
nTPM: 87.2
Samples: 4

Max nTPM: 96.5
Min nTPM: 77.1
Sample A Female 96.5
Sample B Female 77.1
Sample C Male 89.4
Sample D Male 85.8
Subiculum
nTPM: 57.6
Samples: 4

Max nTPM: 74.4
Min nTPM: 40.8
Sample A Female 74.4
Sample B Female 53.3
Sample C Male 40.8
Sample D Male 61.7
Ventral hippocampus
nTPM: 21.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 16.7
Sample A Female 22.1
Sample B Female 17.7
Sample C Male 28.9
Sample D Male 16.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 229.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 229.1
Samples: 4

Max nTPM: 278.9
Min nTPM: 177.3
Sample A Male 227.3
Sample B Male 278.9
Sample C Female 177.3
Sample D Female 233.0
Hippocampal formation
nTPM: 95.2
Samples: 4

Max nTPM: 129.7
Min nTPM: 76.3
Sample A Male 129.7
Sample B Male 80.2
Sample C Female 76.3
Sample D Female 94.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
2645 Antisense, RP_Baylor_253979, Mouse strain C57BL/6J (56 days, male) 8.9
2646 Antisense, RP_Baylor_253979, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.