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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA:29.2 nTPM
GTEx:42.8 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:28.9 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.0
2846 Female, age 79, unknown 30.2
1781 Male, age 74, unknown 28.0
2290 Female, age 72, unknown 27.6
2289 Male, age 61, right hemisphere 26.0
1857 Female, age 85, left hemisphere 25.6
1854 Male, age 80, left hemisphere 24.8
2288 Male, age 75, left hemisphere 23.1
2481 Female, age 94, left hemisphere 22.5
Claustrum
nTPM: 28.4
2645 Female, age 72, unknown 37.2
2568 Male, age 61, both hemispheres 31.2
2284 Female, age 91, both hemispheres 29.3
2196 Female, age 79, unknown 28.7
1956 Male, age 74, unknown 28.6
2198 Male, age 80, both hemispheres 28.4
2491 Male, age 75, both hemispheres 27.0
2292 Female, age 85, both hemispheres 24.0
2392 Female, age 94, both hemispheres 21.5
Globus pallidus, externus
nTPM: 20.4
2646 Male, age 61, right hemisphere 25.1
2395 Male, age 75, both hemispheres 19.7
2567 Female, age 72, unknown 19.5
2772 Female, age 79, unknown 19.2
1996 Male, age 80, right hemisphere 18.3
Globus pallidus, internus
nTPM: 18.9
2483 Female, age 94, right hemisphere 22.1
2566 Female, age 72, unknown 19.8
1818 Male, age 74, unknown 19.0
2287 Male, age 75, right hemisphere 19.0
2778 Female, age 91, both hemispheres 18.6
2037 Male, age 80, right hemisphere 17.6
2111 Female, age 85, right hemisphere 16.4
Nucleus accumbens
nTPM: 24.4
1783 Male, age 74, unknown 29.3
1856 Female, age 91, right hemisphere 28.4
2698 Female, age 72, unknown 25.4
2824 Male, age 61, right hemisphere 25.1
1806 Female, age 85, left hemisphere 24.8
2286 Male, age 75, left hemisphere 23.8
2732 Male, age 80, right hemisphere 20.2
2391 Female, age 94, left hemisphere 18.5
Nucleus basalis of Meynert
nTPM: 23.2
2569 Male, age 61, both hemispheres 27.9
2484 Female, age 94, left hemisphere 23.3
2393 Male, age 80, right hemisphere 20.9
2821 Male, age 75, both hemispheres 20.8
Nucleus of the diagonal band
nTPM: 28.3
2195 Female, age 85, both hemispheres 30.7
2775 Male, age 80, right hemisphere 28.6
2029 Male, age 61, right hemisphere 28.5
1812 Female, age 91, both hemispheres 27.8
1979 Male, age 74, unknown 26.1
Olfactory tubercle
nTPM: 29.2
1998 Female, age 91, both hemispheres 30.1
2487 Female, age 94, left hemisphere 29.6
1846 Male, age 80, right hemisphere 28.6
2856 Male, age 75, right hemisphere 28.4
Putamen
nTPM: 26.8
2647 Male, age 75, left hemisphere 28.6
1838 Male, age 80, right hemisphere 28.4
2489 Female, age 72, unknown 28.1
2466 Female, age 79, unknown 27.4
1937 Female, age 91, right hemisphere 26.3
1829 Male, age 74, unknown 25.7
2482 Female, age 94, left hemisphere 23.2
Septal nuclei
nTPM: 26.3
1960 Male, age 74, unknown 30.8
2629 Female, age 94, right hemisphere 28.9
2009 Female, age 91, both hemispheres 28.7
2031 Female, age 72, unknown 28.2
2059 Female, age 85, both hemispheres 24.5
2394 Male, age 61, left hemisphere 22.1
2199 Male, age 80, right hemisphere 20.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.8
Samples: 246

Max nTPM: 58.3
Min nTPM: 17.7
Std nTPM: 7.9
Median nTPM: 38.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 56.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 56.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 54.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 54.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 53.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 53.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 53.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.8
Samples: 246

Max nTPM: 70.2
Min nTPM: 14.5
Std nTPM: 9.1
Median nTPM: 43.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 70.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 67.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 64.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 61.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 60.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 60.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 59.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 58.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 57.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 57.7
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Brain - Putamen (basal ganglia)
Average nTPM: 37.2
Samples: 205

Max nTPM: 57.6
Min nTPM: 21.4
Std nTPM: 7.9
Median nTPM: 37.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 57.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 56.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 55.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 52.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 51.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 51.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 49.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 49.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 49.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 49.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 49.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.0
FF:10164-103B2 76 years, female 14.0
Globus pallidus
Scaled Tags Per Million: 8.4
FF:10161-103A8 76 years, female 13.0
FF:10175-103C4 60 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 15.6
FF:10176-103C5 60 years, female 15.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Caudate
nTPM: 26.8
Samples: 4

Max nTPM: 33.9
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 28.5
Sample C Male 33.9
Sample D Male 23.6
Putamen
nTPM: 28.1
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.0
Sample A Female 22.0
Sample B Female 24.0
Sample C Male 34.3
Sample D Male 32.0
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 25.1
Min nTPM: 22.9
Sample A Female 23.5
Sample B Female 22.9
Sample C Male 25.1
Sample D Male 23.4
Ventral pallidum
nTPM: 24.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 24.5
Sample C Male 29.9
Sample D Male 23.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.2
Sample A Male 22.6
Sample B Male 22.2
Sample C Female 26.2
Sample D Female 26.1
Septum
nTPM: 28.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.7
Sample A Male 28.2
Sample B Male 27.7
Sample C Female 31.5
Sample D Female 28.3
Ventral forebrain
nTPM: 27.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 26.1
Sample A Male 28.9
Sample B Male 26.3
Sample C Female 26.1
Sample D Female 26.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
69174553 Antisense, RP_050329_03_A07, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 2.4
69174553 Antisense, RP_050329_03_A07, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.