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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA:31.3 nTPM
GTEx:11.4 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:27.1 nTPM
Allen mouse:8.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.8
2288 Male, age 75, left hemisphere 10.6
1857 Female, age 85, left hemisphere 8.6
2481 Female, age 94, left hemisphere 8.2
2846 Female, age 79, unknown 4.4
1781 Male, age 74, unknown 3.2
1854 Male, age 80, left hemisphere 2.4
2290 Female, age 72, unknown 1.4
2289 Male, age 61, right hemisphere 0.0
Claustrum
nTPM: 5.2
2491 Male, age 75, both hemispheres 8.0
2392 Female, age 94, both hemispheres 7.9
2568 Male, age 61, both hemispheres 7.7
2284 Female, age 91, both hemispheres 6.2
1956 Male, age 74, unknown 5.0
2645 Female, age 72, unknown 4.6
2198 Male, age 80, both hemispheres 4.4
2196 Female, age 79, unknown 2.9
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.1
2772 Female, age 79, unknown 0.8
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 7.0
1856 Female, age 91, right hemisphere 27.5
2286 Male, age 75, left hemisphere 10.1
1806 Female, age 85, left hemisphere 5.1
2698 Female, age 72, unknown 5.1
2732 Male, age 80, right hemisphere 4.4
2824 Male, age 61, right hemisphere 3.0
1783 Male, age 74, unknown 0.7
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 31.3
1979 Male, age 74, unknown 48.2
2029 Male, age 61, right hemisphere 30.7
1812 Female, age 91, both hemispheres 28.2
2775 Male, age 80, right hemisphere 26.6
2195 Female, age 85, both hemispheres 22.6
Olfactory tubercle
nTPM: 17.5
1998 Female, age 91, both hemispheres 25.5
1846 Male, age 80, right hemisphere 22.0
2487 Female, age 94, left hemisphere 13.5
2856 Male, age 75, right hemisphere 9.0
Putamen
nTPM: 2.2
1937 Female, age 91, right hemisphere 8.9
1838 Male, age 80, right hemisphere 4.2
2466 Female, age 79, unknown 2.7
2482 Female, age 94, left hemisphere 0.1
1829 Male, age 74, unknown 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 25.8
2394 Male, age 61, left hemisphere 35.0
2009 Female, age 91, both hemispheres 34.9
2031 Female, age 72, unknown 33.8
1960 Male, age 74, unknown 23.9
2199 Male, age 80, right hemisphere 23.2
2629 Female, age 94, right hemisphere 18.4
2059 Female, age 85, both hemispheres 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 47.3
Min nTPM: 3.7
Std nTPM: 4.2
Median nTPM: 8.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 47.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 32.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 26.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 22.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 20.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 20.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 19.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 17.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 16.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 16.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.4
Samples: 246

Max nTPM: 46.0
Min nTPM: 5.2
Std nTPM: 4.3
Median nTPM: 10.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 46.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 30.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 24.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 22.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 22.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 21.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 21.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 21.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 20.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 20.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 20.3
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Brain - Putamen (basal ganglia)
Average nTPM: 7.6
Samples: 205

Max nTPM: 53.0
Min nTPM: 3.4
Std nTPM: 4.0
Median nTPM: 6.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 53.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 22.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 17.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 16.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 15.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 14.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 14.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 13.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 13.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 12.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.4
FF:10164-103B2 76 years, female 87.4
Globus pallidus
Scaled Tags Per Million: 35.4
FF:10175-103C4 60 years, female 48.1
FF:10161-103A8 76 years, female 22.7
Nucleus accumbens
Scaled Tags Per Million: 85.7
FF:10037-101F1 23-56 years, mixed 85.7
Putamen
Scaled Tags Per Million: 93.2
FF:10176-103C5 60 years, female 93.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.8
Sample A Female 14.5
Sample B Female 14.2
Sample C Male 12.2
Sample D Male 11.8
Putamen
nTPM: 10.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 8.9
Sample A Female 9.4
Sample B Female 8.9
Sample C Male 13.6
Sample D Male 10.8
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 41.5
Min nTPM: 15.5
Sample A Female 16.6
Sample B Female 15.5
Sample C Male 41.5
Sample D Male 22.2
Ventral pallidum
nTPM: 15.0
Samples: 4

Max nTPM: 22.4
Min nTPM: 11.6
Sample A Female 13.6
Sample B Female 11.6
Sample C Male 22.4
Sample D Male 12.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 21.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 18.8
Sample A Male 20.3
Sample B Male 18.8
Sample C Female 21.4
Sample D Female 25.5
Septum
nTPM: 17.2
Samples: 4

Max nTPM: 20.7
Min nTPM: 15.3
Sample A Male 16.6
Sample B Male 15.3
Sample C Female 20.7
Sample D Female 16.3
Ventral forebrain
nTPM: 27.1
Samples: 4

Max nTPM: 30.8
Min nTPM: 21.6
Sample A Male 21.6
Sample B Male 27.1
Sample C Female 30.8
Sample D Female 28.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.9
71717082 Antisense, RP_050505_01_C12, Mouse strain C57BL/6J (56 days, male) 5.9
69752405 Antisense, RP_050505_01_C12, Mouse strain C57BL/6J (56 days, male) 5.6
Pallidum
Expression energy: 8.2
69752405 Antisense, RP_050505_01_C12, Mouse strain C57BL/6J (56 days, male) 8.2
71717082 Antisense, RP_050505_01_C12, Mouse strain C57BL/6J (56 days, male) 7.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.