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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:23.7 nTPM
HPA:23.7 nTPM
GTEx:26.0 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:86.0 nTPM
Allen mouse:14.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004246Antibody CAB018641
Glial cells HighHigh
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.7
Sample id Sample description nTPM
Hippocampus
nTPM: 19.5
1898 Male, age 80, left hemisphere 26.3
1855 Male, age 76, left hemisphere 20.5
2148 Female, age 91, left hemisphere 20.1
2621 Female, age 67, right hemisphere 19.1
1911 Female, age 85, right hemisphere 16.1
2529 Female, age 94, left hemisphere 15.2
Dentate gyrus
nTPM: 18.2
1927 Female, age 91, both hemispheres 19.9
2010 Male, age 76, both hemispheres 19.0
2246 Female, age 85, both hemispheres 18.7
2531 Female, age 67, both hemispheres 18.0
2528 Male, age 74, both hemispheres 17.9
2530 Female, age 94, left hemisphere 15.6
Entorhinal gyrus
nTPM: 21.9
2613 Female, age 94, left hemisphere 26.9
1938 Female, age 85, left hemisphere 24.3
2764 Male, age 80, right hemisphere 22.9
2686 Male, age 75, right hemisphere 20.4
1787 Male, age 76, left hemisphere 19.1
2117 Female, age 91, right hemisphere 17.9
Hippocampus, CA1
nTPM: 23.7
2749 Male, age 80, left hemisphere 44.0
2527 Male, age 74, both hemispheres 19.5
1873 Female, age 85, both hemispheres 19.2
2045 Male, age 76, both hemispheres 17.8
2082 Female, age 91, right hemisphere 17.7
Hippocampus, CA2
nTPM: 19.4
1892 Male, age 76, both hemispheres 24.1
1963 Male, age 80, left hemisphere 22.2
2249 Male, age 74, both hemispheres 18.1
2437 Female, age 94, left hemisphere 17.6
1940 Female, age 85, left hemisphere 17.4
2113 Female, age 91, right hemisphere 17.0
Hippocampus, CA3
nTPM: 22.4
2137 Male, age 80, left hemisphere 36.0
1867 Male, age 76, both hemispheres 23.4
2620 Female, age 94, left hemisphere 22.1
2861 Female, age 67, both hemispheres 19.1
1891 Female, age 85, both hemispheres 17.2
2436 Male, age 74, both hemispheres 16.4
Parahippocampal cortex
nTPM: 21.2
2245 Female, age 91, both hemispheres 23.2
1933 Female, age 85, both hemispheres 23.0
1850 Male, age 80, both hemispheres 22.9
2532 Female, age 72, left hemisphere 22.4
2622 Female, age 67, right hemisphere 22.3
1990 Female, age 91, right hemisphere 22.1
2693 Female, age 94, both hemispheres 21.3
2250 Female, age 67, right hemisphere 18.8
2018 Male, age 76, both hemispheres 18.3
2692 Male, age 74, both hemispheres 17.5
Perirhinal gyrus
nTPM: 21.8
1847 Female, age 91, left hemisphere 28.1
2521 Female, age 94, right hemisphere 24.8
1794 Male, age 80, right hemisphere 21.6
1841 Female, age 85, right hemisphere 17.5
2848 Male, age 76, right hemisphere 16.8
Subiculum
nTPM: 19.2
1901 Male, age 80, both hemispheres 26.1
1977 Female, age 85, both hemispheres 20.1
2042 Male, age 76, both hemispheres 18.5
2729 Female, age 91, right hemisphere 18.0
2438 Female, age 94, left hemisphere 16.4
2619 Male, age 74, both hemispheres 16.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.0
Samples: 197

Max nTPM: 76.1
Min nTPM: 8.7
Std nTPM: 10.8
Median nTPM: 24.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 76.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 56.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 50.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 50.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 49.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 48.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 48.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 47.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 47.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 45.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 44.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.3
FF:10169-103B7 60 years, female 63.8
FF:10153-102I9 76 years, female 56.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 57.8
Samples: 4

Max nTPM: 67.3
Min nTPM: 43.3
Sample A Female 67.3
Sample B Female 59.7
Sample C Male 43.3
Sample D Male 60.7
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 42.2
Min nTPM: 34.6
Sample A Female 42.2
Sample B Female 34.6
Sample C Male 37.8
Sample D Male 37.8
Subiculum
nTPM: 42.8
Samples: 4

Max nTPM: 56.3
Min nTPM: 36.0
Sample A Female 56.3
Sample B Female 36.0
Sample C Male 41.4
Sample D Male 37.5
Ventral hippocampus
nTPM: 56.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 50.0
Sample A Female 62.3
Sample B Female 50.0
Sample C Male 61.9
Sample D Male 51.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.8
Samples: 4

Max nTPM: 85.5
Min nTPM: 57.8
Sample A Male 57.8
Sample B Male 60.2
Sample C Female 85.5
Sample D Female 71.7
Hippocampal formation
nTPM: 86.0
Samples: 4

Max nTPM: 87.6
Min nTPM: 84.9
Sample A Male 86.4
Sample B Male 85.0
Sample C Female 87.6
Sample D Female 84.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.6
68341256 Antisense, RP_041207_01_B12, Mouse strain C57BL/6J (56 days, male) 16.6
30 Antisense, RP_Baylor_103329, Mouse strain C57BL/6J (56 days, male) 12.6
29 Antisense, RP_Baylor_103329, Mouse strain C57BL/6J (56 days, male) 8.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.