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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:80.7 nTPM
HPA:80.7 nTPM
GTEx:55.2 nTPM
FANTOM5:65.7 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:36.5 nTPM
Allen mouse:5.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020430Antibody CAB020767
Glial cells MediumLow
Neuronal cells MediumLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 80.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.6
1781 Male, age 74, unknown 50.5
2288 Male, age 75, left hemisphere 50.1
2846 Female, age 79, unknown 44.8
2290 Female, age 72, unknown 43.5
1854 Male, age 80, left hemisphere 42.9
2289 Male, age 61, right hemisphere 42.3
1857 Female, age 85, left hemisphere 41.7
2481 Female, age 94, left hemisphere 40.7
Claustrum
nTPM: 69.8
2292 Female, age 85, both hemispheres 78.8
2645 Female, age 72, unknown 76.0
2568 Male, age 61, both hemispheres 72.8
1956 Male, age 74, unknown 72.6
2284 Female, age 91, both hemispheres 70.0
2491 Male, age 75, both hemispheres 67.8
2198 Male, age 80, both hemispheres 67.5
2196 Female, age 79, unknown 65.2
2392 Female, age 94, both hemispheres 57.8
Globus pallidus, externus
nTPM: 80.7
2567 Female, age 72, unknown 100.6
2646 Male, age 61, right hemisphere 88.0
1996 Male, age 80, right hemisphere 82.3
2772 Female, age 79, unknown 72.7
2395 Male, age 75, both hemispheres 59.8
Globus pallidus, internus
nTPM: 77.9
2566 Female, age 72, unknown 93.4
2111 Female, age 85, right hemisphere 79.4
2037 Male, age 80, right hemisphere 77.7
1818 Male, age 74, unknown 76.8
2287 Male, age 75, right hemisphere 75.6
2778 Female, age 91, both hemispheres 74.0
2483 Female, age 94, right hemisphere 68.4
Nucleus accumbens
nTPM: 48.9
2391 Female, age 94, left hemisphere 63.1
2698 Female, age 72, unknown 60.2
2732 Male, age 80, right hemisphere 54.6
1783 Male, age 74, unknown 47.1
2286 Male, age 75, left hemisphere 46.8
1806 Female, age 85, left hemisphere 43.1
2824 Male, age 61, right hemisphere 38.2
1856 Female, age 91, right hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 56.2
2569 Male, age 61, both hemispheres 85.9
2821 Male, age 75, both hemispheres 50.4
2484 Female, age 94, left hemisphere 48.4
2393 Male, age 80, right hemisphere 40.1
Nucleus of the diagonal band
nTPM: 52.3
2029 Male, age 61, right hemisphere 55.2
1812 Female, age 91, both hemispheres 53.1
2775 Male, age 80, right hemisphere 53.0
2195 Female, age 85, both hemispheres 52.1
1979 Male, age 74, unknown 48.0
Olfactory tubercle
nTPM: 54.6
1998 Female, age 91, both hemispheres 56.9
1846 Male, age 80, right hemisphere 54.1
2856 Male, age 75, right hemisphere 54.1
2487 Female, age 94, left hemisphere 53.3
Putamen
nTPM: 49.0
2647 Male, age 75, left hemisphere 67.7
1829 Male, age 74, unknown 55.7
2489 Female, age 72, unknown 50.7
2482 Female, age 94, left hemisphere 47.3
1937 Female, age 91, right hemisphere 46.5
2466 Female, age 79, unknown 38.3
1838 Male, age 80, right hemisphere 37.1
Septal nuclei
nTPM: 55.4
2394 Male, age 61, left hemisphere 64.1
2199 Male, age 80, right hemisphere 59.4
2629 Female, age 94, right hemisphere 58.5
2059 Female, age 85, both hemispheres 54.2
1960 Male, age 74, unknown 51.4
2009 Female, age 91, both hemispheres 51.3
2031 Female, age 72, unknown 49.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.9
Samples: 246

Max nTPM: 94.9
Min nTPM: 15.9
Std nTPM: 12.9
Median nTPM: 42.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 88.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 88.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 86.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 83.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 82.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 81.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 81.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 78.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 77.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 71.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.8
Samples: 246

Max nTPM: 111.0
Min nTPM: 18.7
Std nTPM: 13.8
Median nTPM: 38.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 111.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 100.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 88.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 83.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 83.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 81.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 80.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 79.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 77.9
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 74.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 72.2
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Brain - Putamen (basal ganglia)
Average nTPM: 55.2
Samples: 205

Max nTPM: 125.1
Min nTPM: 21.7
Std nTPM: 16.8
Median nTPM: 52.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 125.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 119.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 112.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 108.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 107.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 106.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 96.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 96.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 92.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 91.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 90.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.2
FF:10164-103B2 76 years, female 45.2
Globus pallidus
Scaled Tags Per Million: 65.7
FF:10161-103A8 76 years, female 87.9
FF:10175-103C4 60 years, female 43.4
Nucleus accumbens
Scaled Tags Per Million: 64.1
FF:10037-101F1 23-56 years, mixed 64.1
Putamen
Scaled Tags Per Million: 37.7
FF:10176-103C5 60 years, female 37.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Caudate
nTPM: 21.0
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 21.8
Sample C Male 23.4
Sample D Male 21.1
Putamen
nTPM: 20.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 15.0
Sample A Female 24.3
Sample B Female 15.0
Sample C Male 16.8
Sample D Male 24.4
Septum
nTPM: 20.5
Samples: 4

Max nTPM: 25.4
Min nTPM: 17.0
Sample A Female 21.7
Sample B Female 17.7
Sample C Male 25.4
Sample D Male 17.0
Ventral pallidum
nTPM: 24.7
Samples: 4

Max nTPM: 36.7
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 18.8
Sample C Male 36.7
Sample D Male 24.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.7
Sample A Male 26.7
Sample B Male 32.3
Sample C Female 26.7
Sample D Female 28.2
Septum
nTPM: 36.5
Samples: 4

Max nTPM: 42.3
Min nTPM: 31.6
Sample A Male 42.3
Sample B Male 31.6
Sample C Female 33.8
Sample D Female 38.2
Ventral forebrain
nTPM: 33.9
Samples: 4

Max nTPM: 36.0
Min nTPM: 31.7
Sample A Male 36.0
Sample B Male 31.7
Sample C Female 33.3
Sample D Female 34.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
2137 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 8.0
2138 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 6.0
67764933 Antisense, RP_040916_02_E11, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 4.9
2137 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 6.8
2138 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 6.1
67764933 Antisense, RP_040916_02_E11, Mouse strain C57BL/6J (56 days, male) 3.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.