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SEC61B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.1 nTPM
HPA:102.1 nTPM
GTEx:114.4 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.9
1870 Female, age 42, unknown 102.1
2828 Female, age 72, unknown 101.7
2019 Male, age 18, unknown 101.0
2411 Female, age 72, unknown 100.1
1827 Male, age 72, unknown 99.6
1833 Male, age 53, unknown 98.5
2586 Male, age 75, left hemisphere 97.3
2666 Male, age 74, left hemisphere 97.1
1830 Male, age 51, unknown 97.0
2219 Male, age 76, both hemispheres 94.7
Dorsal raphe nucleus
nTPM: 102.1
2298 Female, age 72, unknown 108.2
2047 Male, age 72, unknown 101.5
2750 Male, age 76, both hemispheres 100.9
1828 Male, age 53, unknown 100.6
2016 Female, age 72, unknown 99.2
Inferior colliculus
nTPM: 100.5
2097 Female, age 72, unknown 104.3
1890 Male, age 53, unknown 101.1
1848 Female, age 42, unknown 98.8
2849 Male, age 72, unknown 97.8
Median raphe nucleus
nTPM: 100.5
2220 Male, age 76, midline 100.5
Pedunculopontine tegmental nucleus
nTPM: 102.1
2338 Male, age 61, both hemispheres 105.1
2334 Male, age 80, both hemispheres 100.7
1921 Female, age 85, both hemispheres 100.3
Periaquaductal grey, anterior
nTPM: 99.3
2502 Female, age 75, unknown 101.0
1795 Male, age 51, unknown 98.7
1947 Male, age 18, unknown 98.2
Periaquaductal grey, dorsal
nTPM: 100.6
2850 Male, age 76, both hemispheres 102.8
1840 Male, age 53, unknown 101.3
1831 Male, age 72, unknown 100.2
2464 Female, age 72, unknown 98.2
Periaquaductal grey, lateral
nTPM: 100.7
2053 Male, age 18, unknown 101.2
2272 Male, age 74, both hemispheres 101.0
2140 Male, age 76, both hemispheres 100.1
Pretectal area
nTPM: 101.4
2667 Female, age 75, unknown 104.1
1817 Female, age 42, unknown 102.5
2273 Male, age 74, both hemispheres 101.9
1815 Male, age 53, unknown 101.5
1816 Male, age 51, unknown 101.3
1944 Female, age 72, unknown 101.3
2224 Female, age 72, unknown 101.2
2407 Male, age 75, both hemispheres 100.7
2316 Male, age 76, right hemisphere 100.5
2825 Male, age 18, unknown 100.4
2007 Male, age 72, unknown 100.3
Red nucleus
nTPM: 100.4
1821 Female, age 72, unknown 103.9
1865 Male, age 51, unknown 102.7
2769 Male, age 72, unknown 101.8
1904 Male, age 53, unknown 101.4
1954 Female, age 42, unknown 101.4
2823 Male, age 76, right hemisphere 101.0
2227 Male, age 72, unknown 100.6
2503 Female, age 72, unknown 99.6
2785 Male, age 18, unknown 99.6
2725 Female, age 75, unknown 99.4
2584 Male, age 75, left hemisphere 97.7
2588 Male, age 74, left hemisphere 95.9
Substantia nigra
nTPM: 100.5
1889 Female, age 72, unknown 103.9
1851 Male, age 51, unknown 102.9
1916 Female, age 42, unknown 101.8
2409 Female, age 72, unknown 101.8
2699 Male, age 18, unknown 100.5
2241 Male, age 72, unknown 100.1
1941 Male, age 53, unknown 99.6
2590 Female, age 75, unknown 98.8
2665 Male, age 74, both hemispheres 98.3
2583 Male, age 75, right hemisphere 97.1
Superior colliculus
nTPM: 100.0
2587 Male, age 74, left hemisphere 103.5
1913 Female, age 42, unknown 102.8
1995 Male, age 72, unknown 101.9
1895 Male, age 76, right hemisphere 100.8
2261 Male, age 18, unknown 99.8
1796 Male, age 53, unknown 98.9
2087 Female, age 72, unknown 98.9
1839 Male, age 51, unknown 98.8
2668 Female, age 75, unknown 98.4
2664 Male, age 75, both hemispheres 95.8
Ventral tegmental area
nTPM: 100.3
1915 Female, age 42, unknown 102.0
2021 Male, age 53, unknown 101.0
2410 Female, age 72, unknown 100.6
2218 Male, age 76, both hemispheres 99.6
2223 Female, age 72, unknown 99.6
1942 Male, age 51, unknown 99.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.4
Samples: 139

Max nTPM: 225.6
Min nTPM: 62.9
Std nTPM: 32.0
Median nTPM: 107.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 225.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 220.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 210.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 203.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 186.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 182.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 177.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 177.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 176.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 176.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.2
FF:10158-103A5 76 years, female 71.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.2
Pig sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 17.6
Min nTPM: 9.3
Sample A Female 17.6
Sample B Female 10.3
Sample C Male 10.0
Sample D Male 9.3
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 11.1
Min nTPM: 10.2
Sample B Female 10.2
Sample C Male 11.1
Sample D Male 10.3
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.6
Sample A Female 15.1
Sample B Female 11.1
Sample C Male 10.2
Sample D Male 8.6
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.6
Sample A Female 14.7
Sample B Female 12.8
Sample C Male 10.6
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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