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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:27.1 nTPM
FANTOM5:243.2 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:54.4 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.7
1857 Female, age 85, left hemisphere 57.5
1854 Male, age 80, left hemisphere 51.0
2290 Female, age 72, unknown 48.7
2846 Female, age 79, unknown 46.9
1781 Male, age 74, unknown 37.5
2288 Male, age 75, left hemisphere 30.4
2289 Male, age 61, right hemisphere 25.8
2481 Female, age 94, left hemisphere 19.4
Claustrum
nTPM: 21.3
2392 Female, age 94, both hemispheres 31.6
2196 Female, age 79, unknown 28.9
1956 Male, age 74, unknown 26.3
2292 Female, age 85, both hemispheres 24.3
2568 Male, age 61, both hemispheres 18.7
2491 Male, age 75, both hemispheres 17.9
2198 Male, age 80, both hemispheres 17.0
2284 Female, age 91, both hemispheres 16.5
2645 Female, age 72, unknown 10.9
Globus pallidus, externus
nTPM: 23.3
1996 Male, age 80, right hemisphere 26.7
2395 Male, age 75, both hemispheres 24.4
2646 Male, age 61, right hemisphere 23.9
2772 Female, age 79, unknown 22.2
2567 Female, age 72, unknown 19.5
Globus pallidus, internus
nTPM: 29.6
2111 Female, age 85, right hemisphere 37.4
2287 Male, age 75, right hemisphere 35.2
2778 Female, age 91, both hemispheres 33.1
2037 Male, age 80, right hemisphere 28.7
2566 Female, age 72, unknown 25.8
1818 Male, age 74, unknown 24.2
2483 Female, age 94, right hemisphere 22.6
Nucleus accumbens
nTPM: 45.2
1806 Female, age 85, left hemisphere 58.1
1783 Male, age 74, unknown 57.7
2698 Female, age 72, unknown 50.0
2391 Female, age 94, left hemisphere 45.7
1856 Female, age 91, right hemisphere 45.0
2824 Male, age 61, right hemisphere 44.1
2286 Male, age 75, left hemisphere 31.7
2732 Male, age 80, right hemisphere 29.5
Nucleus basalis of Meynert
nTPM: 28.4
2393 Male, age 80, right hemisphere 40.8
2484 Female, age 94, left hemisphere 25.0
2569 Male, age 61, both hemispheres 24.9
2821 Male, age 75, both hemispheres 23.1
Nucleus of the diagonal band
nTPM: 12.3
1979 Male, age 74, unknown 16.5
2775 Male, age 80, right hemisphere 13.1
1812 Female, age 91, both hemispheres 12.5
2029 Male, age 61, right hemisphere 11.0
2195 Female, age 85, both hemispheres 8.6
Olfactory tubercle
nTPM: 14.1
1998 Female, age 91, both hemispheres 18.6
1846 Male, age 80, right hemisphere 13.6
2856 Male, age 75, right hemisphere 12.5
2487 Female, age 94, left hemisphere 11.8
Putamen
nTPM: 36.8
1838 Male, age 80, right hemisphere 55.9
1829 Male, age 74, unknown 44.5
1937 Female, age 91, right hemisphere 41.7
2466 Female, age 79, unknown 37.7
2482 Female, age 94, left hemisphere 29.9
2489 Female, age 72, unknown 27.6
2647 Male, age 75, left hemisphere 20.7
Septal nuclei
nTPM: 13.5
2394 Male, age 61, left hemisphere 20.7
2059 Female, age 85, both hemispheres 15.9
2199 Male, age 80, right hemisphere 15.4
2629 Female, age 94, right hemisphere 14.8
2031 Female, age 72, unknown 11.0
2009 Female, age 91, both hemispheres 10.7
1960 Male, age 74, unknown 5.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 49.3
Min nTPM: 8.7
Std nTPM: 7.8
Median nTPM: 19.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 49.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 45.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 44.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 43.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 42.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 41.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 41.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 40.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 39.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 37.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 74.1
Min nTPM: 6.4
Std nTPM: 12.4
Median nTPM: 26.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 74.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 72.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 59.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 55.3
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 53.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 52.6
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 51.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 51.0
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 50.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 49.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 49.7
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Brain - Putamen (basal ganglia)
Average nTPM: 19.5
Samples: 205

Max nTPM: 44.9
Min nTPM: 6.0
Std nTPM: 7.5
Median nTPM: 18.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 44.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 44.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 42.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 41.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 39.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 37.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 36.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 34.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 34.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 33.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 32.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 243.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 179.6
FF:10164-103B2 76 years, female 179.6
Globus pallidus
Scaled Tags Per Million: 243.2
FF:10175-103C4 60 years, female 306.2
FF:10161-103A8 76 years, female 180.3
Nucleus accumbens
Scaled Tags Per Million: 169.0
FF:10037-101F1 23-56 years, mixed 169.0
Putamen
Scaled Tags Per Million: 198.1
FF:10176-103C5 60 years, female 198.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.6
Pig sample Sample description nTPM
Caudate
nTPM: 46.5
Samples: 4

Max nTPM: 55.0
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 44.0
Sample C Male 55.0
Sample D Male 52.3
Putamen
nTPM: 49.7
Samples: 4

Max nTPM: 65.1
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 48.3
Sample C Male 65.1
Sample D Male 58.2
Septum
nTPM: 29.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 26.0
Sample A Female 33.1
Sample B Female 31.9
Sample C Male 26.0
Sample D Male 27.6
Ventral pallidum
nTPM: 33.9
Samples: 4

Max nTPM: 42.3
Min nTPM: 22.3
Sample A Female 40.3
Sample B Female 30.6
Sample C Male 22.3
Sample D Male 42.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.4
Samples: 4

Max nTPM: 57.3
Min nTPM: 48.1
Sample A Male 48.1
Sample B Male 57.3
Sample C Female 55.4
Sample D Female 56.9
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 33.4
Min nTPM: 25.7
Sample A Male 33.4
Sample B Male 26.9
Sample C Female 25.7
Sample D Female 28.1
Ventral forebrain
nTPM: 34.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 30.0
Sample A Male 30.0
Sample B Male 36.8
Sample C Female 36.8
Sample D Female 35.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
69816984 Antisense, RP_050510_02_D05, Mouse strain C57BL/6J (56 days, male) 1.4
73521809 Antisense, RP_051101_03_A08, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.3
69816984 Antisense, RP_050510_02_D05, Mouse strain C57BL/6J (56 days, male) 0.4
73521809 Antisense, RP_051101_03_A08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.