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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:79.5 nTPM
HPA:79.5 nTPM
GTEx:79.3 nTPM
FANTOM5:76.9 Scaled Tags Per Million
Pig:62.2 nTPM
Mouse:86.8 nTPM
Allen mouse:4.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006456Antibody CAB009893
Glial cells MediumNot detected
Neuronal cells MediumLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.5
Sample id Sample description nTPM
Hippocampus
nTPM: 75.0
1898 Male, age 80, left hemisphere 78.5
2529 Female, age 94, left hemisphere 78.2
2148 Female, age 91, left hemisphere 77.7
1911 Female, age 85, right hemisphere 73.1
2621 Female, age 67, right hemisphere 71.6
1855 Male, age 76, left hemisphere 70.9
Dentate gyrus
nTPM: 76.8
2010 Male, age 76, both hemispheres 80.7
2528 Male, age 74, both hemispheres 79.5
2530 Female, age 94, left hemisphere 79.2
2246 Female, age 85, both hemispheres 77.3
1927 Female, age 91, both hemispheres 73.3
2531 Female, age 67, both hemispheres 70.8
Entorhinal gyrus
nTPM: 73.3
2117 Female, age 91, right hemisphere 76.8
2764 Male, age 80, right hemisphere 74.3
1938 Female, age 85, left hemisphere 73.4
2686 Male, age 75, right hemisphere 73.2
1787 Male, age 76, left hemisphere 72.0
2613 Female, age 94, left hemisphere 70.4
Hippocampus, CA1
nTPM: 75.9
2082 Female, age 91, right hemisphere 88.3
2527 Male, age 74, both hemispheres 74.8
1873 Female, age 85, both hemispheres 73.4
2749 Male, age 80, left hemisphere 71.6
2045 Male, age 76, both hemispheres 71.3
Hippocampus, CA2
nTPM: 79.5
2249 Male, age 74, both hemispheres 91.6
1940 Female, age 85, left hemisphere 86.1
2113 Female, age 91, right hemisphere 77.7
1963 Male, age 80, left hemisphere 75.1
2437 Female, age 94, left hemisphere 74.6
1892 Male, age 76, both hemispheres 71.7
Hippocampus, CA3
nTPM: 75.6
2436 Male, age 74, both hemispheres 90.8
2620 Female, age 94, left hemisphere 75.3
1891 Female, age 85, both hemispheres 73.7
2861 Female, age 67, both hemispheres 73.1
2137 Male, age 80, left hemisphere 70.6
1867 Male, age 76, both hemispheres 70.1
Parahippocampal cortex
nTPM: 71.9
1850 Male, age 80, both hemispheres 74.2
1990 Female, age 91, right hemisphere 73.8
2692 Male, age 74, both hemispheres 73.3
2250 Female, age 67, right hemisphere 72.7
1933 Female, age 85, both hemispheres 72.5
2018 Male, age 76, both hemispheres 72.0
2245 Female, age 91, both hemispheres 72.0
2622 Female, age 67, right hemisphere 71.3
2532 Female, age 72, left hemisphere 69.0
2693 Female, age 94, both hemispheres 68.5
Perirhinal gyrus
nTPM: 71.3
1847 Female, age 91, left hemisphere 73.8
1841 Female, age 85, right hemisphere 72.0
1794 Male, age 80, right hemisphere 71.9
2521 Female, age 94, right hemisphere 70.8
2848 Male, age 76, right hemisphere 67.9
Subiculum
nTPM: 73.9
2729 Female, age 91, right hemisphere 79.2
2619 Male, age 74, both hemispheres 74.2
2042 Male, age 76, both hemispheres 73.5
1977 Female, age 85, both hemispheres 73.3
1901 Male, age 80, both hemispheres 71.9
2438 Female, age 94, left hemisphere 71.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 79.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.3
Samples: 197

Max nTPM: 443.4
Min nTPM: 5.2
Std nTPM: 54.5
Median nTPM: 63.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 443.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 354.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 275.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 272.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 267.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 248.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 184.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 184.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 177.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 175.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 173.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.9
FF:10153-102I9 76 years, female 89.0
FF:10169-103B7 60 years, female 64.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 60.7
Samples: 4

Max nTPM: 76.9
Min nTPM: 51.2
Sample A Female 76.9
Sample B Female 56.6
Sample C Male 58.1
Sample D Male 51.2
Entorhinal cortex
nTPM: 62.2
Samples: 4

Max nTPM: 68.4
Min nTPM: 53.0
Sample A Female 68.4
Sample B Female 63.0
Sample C Male 64.4
Sample D Male 53.0
Subiculum
nTPM: 56.9
Samples: 4

Max nTPM: 75.8
Min nTPM: 45.2
Sample A Female 75.8
Sample B Female 53.3
Sample C Male 53.1
Sample D Male 45.2
Ventral hippocampus
nTPM: 60.6
Samples: 4

Max nTPM: 77.4
Min nTPM: 44.6
Sample A Female 68.0
Sample B Female 44.6
Sample C Male 77.4
Sample D Male 52.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.8
Samples: 4

Max nTPM: 91.0
Min nTPM: 82.0
Sample A Male 82.0
Sample B Male 90.3
Sample C Female 84.0
Sample D Female 91.0
Hippocampal formation
nTPM: 72.6
Samples: 4

Max nTPM: 75.8
Min nTPM: 71.3
Sample A Male 71.6
Sample B Male 71.6
Sample C Female 75.8
Sample D Female 71.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.7
72710 Antisense, RP_040407_01_G10, Mouse strain C57BL/6J (56 days, male) 13.7
70919352 Antisense, RP_050713_01_B07, Mouse strain C57BL/6J (56 days, male) 3.1
77414110 Antisense, RP_070205_01_E08, Mouse strain C57BL/6J (56 days, male) 1.7
75694281 Antisense, RP_060412_06_H04, Mouse strain C57BL/6J (56 days, male) 0.1
75080228 Antisense, RP_060412_06_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.