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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA:99.8 nTPM
GTEx:84.7 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:62.3 nTPM
Mouse:66.7 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.0
2019 Male, age 18, unknown 81.2
2586 Male, age 75, left hemisphere 76.9
1827 Male, age 72, unknown 76.8
1870 Female, age 42, unknown 74.8
2828 Female, age 72, unknown 73.6
1833 Male, age 53, unknown 73.0
2666 Male, age 74, left hemisphere 71.9
2411 Female, age 72, unknown 71.1
1830 Male, age 51, unknown 70.7
2219 Male, age 76, both hemispheres 70.2
Dorsal raphe nucleus
nTPM: 99.8
2298 Female, age 72, unknown 131.9
2016 Female, age 72, unknown 118.5
1828 Male, age 53, unknown 98.8
2047 Male, age 72, unknown 80.4
2750 Male, age 76, both hemispheres 69.4
Inferior colliculus
nTPM: 75.9
2097 Female, age 72, unknown 79.9
1890 Male, age 53, unknown 77.0
2849 Male, age 72, unknown 75.1
1848 Female, age 42, unknown 71.4
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Pedunculopontine tegmental nucleus
nTPM: 72.1
1921 Female, age 85, both hemispheres 74.6
2334 Male, age 80, both hemispheres 71.7
2338 Male, age 61, both hemispheres 70.2
Periaquaductal grey, anterior
nTPM: 84.9
1795 Male, age 51, unknown 97.9
2502 Female, age 75, unknown 79.5
1947 Male, age 18, unknown 77.5
Periaquaductal grey, dorsal
nTPM: 94.9
2850 Male, age 76, both hemispheres 114.0
1840 Male, age 53, unknown 99.3
1831 Male, age 72, unknown 85.7
2464 Female, age 72, unknown 80.8
Periaquaductal grey, lateral
nTPM: 98.7
2272 Male, age 74, both hemispheres 115.4
2140 Male, age 76, both hemispheres 101.5
2053 Male, age 18, unknown 79.3
Pretectal area
nTPM: 82.8
2273 Male, age 74, both hemispheres 124.7
2224 Female, age 72, unknown 95.3
2667 Female, age 75, unknown 84.2
2825 Male, age 18, unknown 80.3
2407 Male, age 75, both hemispheres 80.1
1816 Male, age 51, unknown 76.3
2316 Male, age 76, right hemisphere 76.1
1944 Female, age 72, unknown 75.5
2007 Male, age 72, unknown 73.9
1817 Female, age 42, unknown 72.9
1815 Male, age 53, unknown 71.8
Red nucleus
nTPM: 73.7
2725 Female, age 75, unknown 78.8
2785 Male, age 18, unknown 77.6
2769 Male, age 72, unknown 76.2
2823 Male, age 76, right hemisphere 74.9
1821 Female, age 72, unknown 74.1
2227 Male, age 72, unknown 73.3
1954 Female, age 42, unknown 72.8
1904 Male, age 53, unknown 72.7
1865 Male, age 51, unknown 71.7
2503 Female, age 72, unknown 71.5
2584 Male, age 75, left hemisphere 70.5
2588 Male, age 74, left hemisphere 70.4
Substantia nigra
nTPM: 76.6
2699 Male, age 18, unknown 81.1
1851 Male, age 51, unknown 79.8
1916 Female, age 42, unknown 78.9
1941 Male, age 53, unknown 78.7
2241 Male, age 72, unknown 78.4
2590 Female, age 75, unknown 77.7
2583 Male, age 75, right hemisphere 74.8
1889 Female, age 72, unknown 73.6
2409 Female, age 72, unknown 71.9
2665 Male, age 74, both hemispheres 70.9
Superior colliculus
nTPM: 79.7
1995 Male, age 72, unknown 94.6
2664 Male, age 75, both hemispheres 89.6
2587 Male, age 74, left hemisphere 85.3
2261 Male, age 18, unknown 78.3
1839 Male, age 51, unknown 76.2
1796 Male, age 53, unknown 76.1
1913 Female, age 42, unknown 75.8
2087 Female, age 72, unknown 74.6
1895 Male, age 76, right hemisphere 74.2
2668 Female, age 75, unknown 72.4
Ventral tegmental area
nTPM: 76.7
1915 Female, age 42, unknown 82.7
2021 Male, age 53, unknown 79.4
1942 Male, age 51, unknown 77.0
2218 Male, age 76, both hemispheres 75.2
2223 Female, age 72, unknown 73.2
2410 Female, age 72, unknown 72.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.7
Samples: 139

Max nTPM: 261.4
Min nTPM: 32.1
Std nTPM: 30.9
Median nTPM: 80.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 261.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 220.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 147.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 147.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 141.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 139.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 130.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 130.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 128.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.3
Pig sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 86.1
Min nTPM: 45.7
Sample A Female 86.1
Sample B Female 45.7
Sample C Male 57.3
Sample D Male 60.0
Periaqueductal gray
nTPM: 58.9
Samples: 3

Max nTPM: 69.4
Min nTPM: 49.8
Sample B Female 49.8
Sample C Male 69.4
Sample D Male 57.5
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 70.8
Min nTPM: 35.9
Sample A Female 70.8
Sample B Female 35.9
Sample C Male 47.3
Sample D Male 36.3
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 76.8
Min nTPM: 46.5
Sample A Female 76.8
Sample B Female 46.5
Sample C Male 66.8
Sample D Male 57.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.7
Samples: 4

Max nTPM: 77.6
Min nTPM: 59.4
Sample A Male 64.5
Sample B Male 59.4
Sample C Female 65.4
Sample D Female 77.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
72710 Antisense, RP_040407_01_G10, Mouse strain C57BL/6J (56 days, male) 8.3
70919352 Antisense, RP_050713_01_B07, Mouse strain C57BL/6J (56 days, male) 2.1
77414110 Antisense, RP_070205_01_E08, Mouse strain C57BL/6J (56 days, male) 1.1
75080228 Antisense, RP_060412_06_H04, Mouse strain C57BL/6J (56 days, male) 0.1
75694281 Antisense, RP_060412_06_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.