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RAPGEF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.8 nTPM
HPA:40.8 nTPM
GTEx:38.2 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:48.7 nTPM
Allen mouse:4.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006426
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Hippocampus
nTPM: 40.8
2621 Female, age 67, right hemisphere 55.8
2148 Female, age 91, left hemisphere 45.4
2529 Female, age 94, left hemisphere 40.1
1911 Female, age 85, right hemisphere 37.2
1855 Male, age 76, left hemisphere 35.3
1898 Male, age 80, left hemisphere 31.0
Dentate gyrus
nTPM: 37.4
2531 Female, age 67, both hemispheres 47.3
1927 Female, age 91, both hemispheres 42.4
2530 Female, age 94, left hemisphere 36.6
2246 Female, age 85, both hemispheres 35.2
2010 Male, age 76, both hemispheres 33.5
2528 Male, age 74, both hemispheres 29.3
Entorhinal gyrus
nTPM: 37.1
2613 Female, age 94, left hemisphere 50.1
1938 Female, age 85, left hemisphere 43.6
2764 Male, age 80, right hemisphere 36.4
2686 Male, age 75, right hemisphere 33.9
1787 Male, age 76, left hemisphere 33.2
2117 Female, age 91, right hemisphere 25.1
Hippocampus, CA1
nTPM: 38.1
2749 Male, age 80, left hemisphere 52.8
2527 Male, age 74, both hemispheres 37.4
1873 Female, age 85, both hemispheres 37.3
2082 Female, age 91, right hemisphere 34.3
2045 Male, age 76, both hemispheres 28.9
Hippocampus, CA2
nTPM: 34.2
1963 Male, age 80, left hemisphere 48.3
2437 Female, age 94, left hemisphere 33.8
2113 Female, age 91, right hemisphere 33.1
1940 Female, age 85, left hemisphere 31.5
1892 Male, age 76, both hemispheres 31.3
2249 Male, age 74, both hemispheres 27.0
Hippocampus, CA3
nTPM: 40.7
2861 Female, age 67, both hemispheres 61.5
2137 Male, age 80, left hemisphere 51.5
1867 Male, age 76, both hemispheres 37.0
2620 Female, age 94, left hemisphere 35.8
2436 Male, age 74, both hemispheres 29.4
1891 Female, age 85, both hemispheres 28.8
Parahippocampal cortex
nTPM: 35.0
2245 Female, age 91, both hemispheres 48.3
2622 Female, age 67, right hemisphere 48.2
2018 Male, age 76, both hemispheres 37.5
2250 Female, age 67, right hemisphere 35.2
1933 Female, age 85, both hemispheres 34.6
2532 Female, age 72, left hemisphere 31.3
2693 Female, age 94, both hemispheres 30.5
1850 Male, age 80, both hemispheres 30.4
2692 Male, age 74, both hemispheres 28.8
1990 Female, age 91, right hemisphere 25.4
Perirhinal gyrus
nTPM: 32.5
1847 Female, age 91, left hemisphere 37.7
1794 Male, age 80, right hemisphere 37.1
1841 Female, age 85, right hemisphere 32.9
2521 Female, age 94, right hemisphere 30.0
2848 Male, age 76, right hemisphere 24.9
Subiculum
nTPM: 32.3
2438 Female, age 94, left hemisphere 37.0
2042 Male, age 76, both hemispheres 34.5
2619 Male, age 74, both hemispheres 32.8
2729 Female, age 91, right hemisphere 31.3
1901 Male, age 80, both hemispheres 30.5
1977 Female, age 85, both hemispheres 27.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.2
Samples: 197

Max nTPM: 94.6
Min nTPM: 14.0
Std nTPM: 14.9
Median nTPM: 33.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 94.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 87.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 82.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 79.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 78.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 75.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 74.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 73.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 71.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 69.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 67.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.1
FF:10153-102I9 76 years, female 37.2
FF:10169-103B7 60 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.9
Sample A Female 23.2
Sample B Female 21.3
Sample C Male 16.9
Sample D Male 17.2
Entorhinal cortex
nTPM: 20.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.2
Sample A Female 21.7
Sample B Female 18.9
Sample C Male 24.0
Sample D Male 18.2
Subiculum
nTPM: 19.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 16.4
Sample A Female 24.5
Sample B Female 17.7
Sample C Male 18.0
Sample D Male 16.4
Ventral hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 15.2
Sample A Female 16.0
Sample B Female 15.2
Sample C Male 24.8
Sample D Male 23.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.7
Samples: 4

Max nTPM: 50.5
Min nTPM: 45.9
Sample A Male 50.5
Sample B Male 48.8
Sample C Female 45.9
Sample D Female 49.5
Hippocampal formation
nTPM: 39.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 37.6
Sample A Male 38.9
Sample B Male 39.3
Sample C Female 41.7
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.6
69817946 Antisense, RP_050510_04_A12, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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