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APBA1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:27.6 nTPM
FANTOM5:38.6 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:74.4 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Hippocampus
nTPM: 8.6
1898 Male, age 80, left hemisphere 16.7
2148 Female, age 91, left hemisphere 13.0
2621 Female, age 67, right hemisphere 13.0
1855 Male, age 76, left hemisphere 6.6
2529 Female, age 94, left hemisphere 2.3
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 8.0
1927 Female, age 91, both hemispheres 15.1
2531 Female, age 67, both hemispheres 14.2
2530 Female, age 94, left hemisphere 10.5
2528 Male, age 74, both hemispheres 5.6
2246 Female, age 85, both hemispheres 1.8
2010 Male, age 76, both hemispheres 0.9
Entorhinal gyrus
nTPM: 14.0
2613 Female, age 94, left hemisphere 34.5
2764 Male, age 80, right hemisphere 18.9
1938 Female, age 85, left hemisphere 15.3
1787 Male, age 76, left hemisphere 10.9
2686 Male, age 75, right hemisphere 4.7
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 8.0
2749 Male, age 80, left hemisphere 19.6
2527 Male, age 74, both hemispheres 12.7
1873 Female, age 85, both hemispheres 7.9
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 8.0
1963 Male, age 80, left hemisphere 26.4
1892 Male, age 76, both hemispheres 7.8
2437 Female, age 94, left hemisphere 7.0
2113 Female, age 91, right hemisphere 4.2
1940 Female, age 85, left hemisphere 2.7
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 9.4
2620 Female, age 94, left hemisphere 26.6
2861 Female, age 67, both hemispheres 25.7
2137 Male, age 80, left hemisphere 4.1
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 8.8
2245 Female, age 91, both hemispheres 17.4
1933 Female, age 85, both hemispheres 12.9
1990 Female, age 91, right hemisphere 11.7
2250 Female, age 67, right hemisphere 11.6
2693 Female, age 94, both hemispheres 11.2
1850 Male, age 80, both hemispheres 10.5
2622 Female, age 67, right hemisphere 7.7
2692 Male, age 74, both hemispheres 3.4
2532 Female, age 72, left hemisphere 1.7
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 16.0
1847 Female, age 91, left hemisphere 31.2
2521 Female, age 94, right hemisphere 22.9
1794 Male, age 80, right hemisphere 15.6
2848 Male, age 76, right hemisphere 6.0
1841 Female, age 85, right hemisphere 4.1
Subiculum
nTPM: 1.6
1977 Female, age 85, both hemispheres 5.2
2619 Male, age 74, both hemispheres 4.4
1901 Male, age 80, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.6
Samples: 197

Max nTPM: 76.9
Min nTPM: 5.3
Std nTPM: 14.4
Median nTPM: 26.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 76.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 70.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 66.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 59.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 57.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 57.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 55.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 55.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 55.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 55.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 54.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.6
FF:10153-102I9 76 years, female 42.7
FF:10169-103B7 60 years, female 34.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.9
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.6
Sample A Female 37.8
Sample B Female 36.6
Sample C Male 28.6
Sample D Male 24.6
Entorhinal cortex
nTPM: 37.5
Samples: 4

Max nTPM: 41.1
Min nTPM: 34.5
Sample A Female 37.4
Sample B Female 37.0
Sample C Male 41.1
Sample D Male 34.5
Subiculum
nTPM: 42.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 33.5
Sample A Female 56.2
Sample B Female 38.1
Sample C Male 40.5
Sample D Male 33.5
Ventral hippocampus
nTPM: 34.1
Samples: 4

Max nTPM: 46.8
Min nTPM: 25.3
Sample A Female 29.5
Sample B Female 25.3
Sample C Male 46.8
Sample D Male 34.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 74.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.4
Samples: 4

Max nTPM: 77.9
Min nTPM: 70.7
Sample A Male 76.0
Sample B Male 70.7
Sample C Female 73.0
Sample D Female 77.9
Hippocampal formation
nTPM: 52.0
Samples: 4

Max nTPM: 57.7
Min nTPM: 47.8
Sample A Male 57.7
Sample B Male 51.6
Sample C Female 47.8
Sample D Female 50.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
74658000 Antisense, RP_060220_04_C01, Mouse strain C57BL/6J (56 days, male) 3.0
69526713 Antisense, RP_050421_01_E03, Mouse strain C57BL/6J (56 days, male) 2.4
77869854 Antisense, RP_070212_03_A07, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.