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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:7.4 nTPM
FANTOM5:49.8 Scaled Tags Per Million
Mouse:3.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.2
2411 Female, age 72, unknown 8.8
2586 Male, age 75, left hemisphere 8.3
1830 Male, age 51, unknown 8.2
1833 Male, age 53, unknown 8.2
1870 Female, age 42, unknown 7.0
2666 Male, age 74, left hemisphere 7.0
2019 Male, age 18, unknown 6.8
2828 Female, age 72, unknown 6.8
1827 Male, age 72, unknown 6.1
2219 Male, age 76, both hemispheres 4.4
Dorsal raphe nucleus
nTPM: 5.6
2750 Male, age 76, both hemispheres 8.3
2016 Female, age 72, unknown 5.7
1828 Male, age 53, unknown 5.4
2047 Male, age 72, unknown 4.8
2298 Female, age 72, unknown 3.9
Inferior colliculus
nTPM: 5.8
2849 Male, age 72, unknown 6.6
1848 Female, age 42, unknown 6.0
2097 Female, age 72, unknown 5.5
1890 Male, age 53, unknown 5.2
Median raphe nucleus
nTPM: 5.4
2220 Male, age 76, midline 5.4
Pedunculopontine tegmental nucleus
nTPM: 7.0
2338 Male, age 61, both hemispheres 7.9
2334 Male, age 80, both hemispheres 7.1
1921 Female, age 85, both hemispheres 6.1
Periaquaductal grey, anterior
nTPM: 5.5
1947 Male, age 18, unknown 5.9
2502 Female, age 75, unknown 5.6
1795 Male, age 51, unknown 5.0
Periaquaductal grey, dorsal
nTPM: 4.8
2464 Female, age 72, unknown 6.2
2850 Male, age 76, both hemispheres 4.4
1831 Male, age 72, unknown 4.3
1840 Male, age 53, unknown 4.0
Periaquaductal grey, lateral
nTPM: 5.2
2272 Male, age 74, both hemispheres 5.7
2053 Male, age 18, unknown 5.4
2140 Male, age 76, both hemispheres 4.4
Pretectal area
nTPM: 5.6
2316 Male, age 76, right hemisphere 7.3
2407 Male, age 75, both hemispheres 6.8
1815 Male, age 53, unknown 6.1
2825 Male, age 18, unknown 5.9
2007 Male, age 72, unknown 5.7
1817 Female, age 42, unknown 5.4
1816 Male, age 51, unknown 5.3
2224 Female, age 72, unknown 5.2
2667 Female, age 75, unknown 4.9
1944 Female, age 72, unknown 4.6
2273 Male, age 74, both hemispheres 4.6
Red nucleus
nTPM: 9.7
2823 Male, age 76, right hemisphere 11.4
2769 Male, age 72, unknown 11.0
2227 Male, age 72, unknown 10.9
1904 Male, age 53, unknown 10.8
2503 Female, age 72, unknown 10.3
2588 Male, age 74, left hemisphere 9.8
1865 Male, age 51, unknown 9.4
1954 Female, age 42, unknown 9.1
1821 Female, age 72, unknown 8.8
2584 Male, age 75, left hemisphere 8.3
2785 Male, age 18, unknown 8.3
2725 Female, age 75, unknown 8.2
Substantia nigra
nTPM: 5.0
2583 Male, age 75, right hemisphere 5.8
2590 Female, age 75, unknown 5.5
2699 Male, age 18, unknown 5.5
1851 Male, age 51, unknown 5.2
1889 Female, age 72, unknown 5.0
2409 Female, age 72, unknown 5.0
1916 Female, age 42, unknown 4.7
1941 Male, age 53, unknown 4.5
2665 Male, age 74, both hemispheres 4.3
2241 Male, age 72, unknown 4.0
Superior colliculus
nTPM: 6.6
1913 Female, age 42, unknown 7.9
2668 Female, age 75, unknown 7.8
1895 Male, age 76, right hemisphere 7.6
1995 Male, age 72, unknown 7.4
1839 Male, age 51, unknown 6.6
2587 Male, age 74, left hemisphere 6.3
2261 Male, age 18, unknown 6.0
1796 Male, age 53, unknown 5.8
2087 Female, age 72, unknown 5.6
2664 Male, age 75, both hemispheres 5.3
Ventral tegmental area
nTPM: 6.0
2021 Male, age 53, unknown 6.7
2410 Female, age 72, unknown 6.3
2223 Female, age 72, unknown 6.0
1915 Female, age 42, unknown 5.9
1942 Male, age 51, unknown 5.8
2218 Male, age 76, both hemispheres 5.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 139

Max nTPM: 20.5
Min nTPM: 1.8
Std nTPM: 3.3
Median nTPM: 6.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 20.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 17.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 16.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 15.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 14.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 13.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.8
FF:10158-103A5 76 years, female 49.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.6
Sample A Male 2.8
Sample B Male 3.7
Sample C Female 3.8
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71670695 Antisense, RP_050512_01_H02, Mouse strain C57BL/6J (56 days, male) 0.8
69873726 Antisense, RP_050512_01_H02, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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