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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:157.7 nTPM
HPA:157.7 nTPM
GTEx:109.7 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:246.1 nTPM
Mouse:274.4 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.3
2019 Male, age 18, unknown 175.8
2586 Male, age 75, left hemisphere 170.7
2666 Male, age 74, left hemisphere 161.5
1827 Male, age 72, unknown 154.9
2828 Female, age 72, unknown 137.5
2219 Male, age 76, both hemispheres 124.7
2411 Female, age 72, unknown 122.3
1833 Male, age 53, unknown 94.9
1870 Female, age 42, unknown 90.6
1830 Male, age 51, unknown 90.1
Dorsal raphe nucleus
nTPM: 127.2
2298 Female, age 72, unknown 154.4
2047 Male, age 72, unknown 142.9
1828 Male, age 53, unknown 133.6
2750 Male, age 76, both hemispheres 123.0
2016 Female, age 72, unknown 81.9
Inferior colliculus
nTPM: 119.7
2097 Female, age 72, unknown 145.1
1890 Male, age 53, unknown 123.1
2849 Male, age 72, unknown 105.9
1848 Female, age 42, unknown 104.6
Median raphe nucleus
nTPM: 142.7
2220 Male, age 76, midline 142.7
Pedunculopontine tegmental nucleus
nTPM: 124.8
1921 Female, age 85, both hemispheres 148.7
2334 Male, age 80, both hemispheres 131.9
2338 Male, age 61, both hemispheres 93.8
Periaquaductal grey, anterior
nTPM: 132.2
1795 Male, age 51, unknown 154.3
2502 Female, age 75, unknown 130.3
1947 Male, age 18, unknown 112.0
Periaquaductal grey, dorsal
nTPM: 111.1
1831 Male, age 72, unknown 133.8
1840 Male, age 53, unknown 107.5
2464 Female, age 72, unknown 106.1
2850 Male, age 76, both hemispheres 97.2
Periaquaductal grey, lateral
nTPM: 81.2
2140 Male, age 76, both hemispheres 90.3
2053 Male, age 18, unknown 86.8
2272 Male, age 74, both hemispheres 66.4
Pretectal area
nTPM: 157.7
1817 Female, age 42, unknown 255.0
1816 Male, age 51, unknown 252.7
2007 Male, age 72, unknown 235.6
1944 Female, age 72, unknown 215.1
1815 Male, age 53, unknown 184.6
2667 Female, age 75, unknown 146.6
2224 Female, age 72, unknown 100.3
2825 Male, age 18, unknown 98.7
2407 Male, age 75, both hemispheres 90.5
2316 Male, age 76, right hemisphere 84.8
2273 Male, age 74, both hemispheres 71.2
Red nucleus
nTPM: 105.1
2785 Male, age 18, unknown 158.5
2588 Male, age 74, left hemisphere 155.1
2584 Male, age 75, left hemisphere 133.4
1821 Female, age 72, unknown 109.5
1954 Female, age 42, unknown 101.6
2725 Female, age 75, unknown 98.2
2503 Female, age 72, unknown 92.9
2769 Male, age 72, unknown 88.7
2227 Male, age 72, unknown 88.1
1904 Male, age 53, unknown 80.5
1865 Male, age 51, unknown 78.0
2823 Male, age 76, right hemisphere 76.1
Substantia nigra
nTPM: 131.7
1889 Female, age 72, unknown 187.2
2665 Male, age 74, both hemispheres 186.0
1941 Male, age 53, unknown 172.4
1916 Female, age 42, unknown 149.4
2583 Male, age 75, right hemisphere 136.4
2590 Female, age 75, unknown 119.1
1851 Male, age 51, unknown 113.2
2241 Male, age 72, unknown 90.5
2409 Female, age 72, unknown 87.7
2699 Male, age 18, unknown 75.4
Superior colliculus
nTPM: 126.3
2087 Female, age 72, unknown 203.5
2664 Male, age 75, both hemispheres 152.1
2261 Male, age 18, unknown 150.4
2668 Female, age 75, unknown 133.8
1796 Male, age 53, unknown 128.5
1839 Male, age 51, unknown 111.3
1895 Male, age 76, right hemisphere 102.4
2587 Male, age 74, left hemisphere 97.8
1913 Female, age 42, unknown 93.3
1995 Male, age 72, unknown 89.8
Ventral tegmental area
nTPM: 109.1
2218 Male, age 76, both hemispheres 130.9
2410 Female, age 72, unknown 123.7
1942 Male, age 51, unknown 115.3
1915 Female, age 42, unknown 111.2
2021 Male, age 53, unknown 90.8
2223 Female, age 72, unknown 82.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.7
Samples: 139

Max nTPM: 393.2
Min nTPM: 30.8
Std nTPM: 52.9
Median nTPM: 105.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 393.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 338.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 211.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 196.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 190.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 188.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 185.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 183.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 182.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 177.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 175.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 246.1
Pig sample Sample description nTPM
Midbrain
nTPM: 193.6
Samples: 4

Max nTPM: 347.8
Min nTPM: 112.0
Sample A Female 128.5
Sample B Female 112.0
Sample C Male 347.8
Sample D Male 185.9
Periaqueductal gray
nTPM: 118.7
Samples: 3

Max nTPM: 143.5
Min nTPM: 104.0
Sample B Female 108.6
Sample C Male 143.5
Sample D Male 104.0
Substantia nigra
nTPM: 157.5
Samples: 4

Max nTPM: 203.3
Min nTPM: 94.4
Sample A Female 203.3
Sample B Female 139.4
Sample C Male 193.0
Sample D Male 94.4
Superior colliculi
nTPM: 246.1
Samples: 4

Max nTPM: 299.7
Min nTPM: 191.9
Sample A Female 226.0
Sample B Female 299.7
Sample C Male 266.8
Sample D Male 191.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 274.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 274.5
Samples: 4

Max nTPM: 298.3
Min nTPM: 247.2
Sample A Male 247.2
Sample B Male 270.7
Sample C Female 298.3
Sample D Female 281.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
69262230 Antisense, RP_050301_01_F10, Mouse strain C57BL/6J (56 days, male) 24.1
70812774 Antisense, RP_050712_02_E12, Mouse strain C57BL/6J (56 days, male) 11.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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