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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA:39.1 nTPM
GTEx:34.9 nTPM
FANTOM5:147.6 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:62.1 nTPM
Allen mouse:8.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.1
2481 Female, age 94, left hemisphere 42.1
2846 Female, age 79, unknown 40.2
2288 Male, age 75, left hemisphere 39.7
2290 Female, age 72, unknown 38.9
1854 Male, age 80, left hemisphere 38.7
1857 Female, age 85, left hemisphere 38.4
2289 Male, age 61, right hemisphere 37.8
1781 Male, age 74, unknown 37.3
Claustrum
nTPM: 36.8
2392 Female, age 94, both hemispheres 38.5
2491 Male, age 75, both hemispheres 37.5
1956 Male, age 74, unknown 37.3
2292 Female, age 85, both hemispheres 37.3
2196 Female, age 79, unknown 37.0
2198 Male, age 80, both hemispheres 36.7
2284 Female, age 91, both hemispheres 36.0
2645 Female, age 72, unknown 35.8
2568 Male, age 61, both hemispheres 35.4
Globus pallidus, externus
nTPM: 38.3
1996 Male, age 80, right hemisphere 39.6
2395 Male, age 75, both hemispheres 39.3
2567 Female, age 72, unknown 38.2
2772 Female, age 79, unknown 37.3
2646 Male, age 61, right hemisphere 36.9
Globus pallidus, internus
nTPM: 38.3
2287 Male, age 75, right hemisphere 39.6
2483 Female, age 94, right hemisphere 39.3
2778 Female, age 91, both hemispheres 38.7
2037 Male, age 80, right hemisphere 38.0
1818 Male, age 74, unknown 37.8
2111 Female, age 85, right hemisphere 37.5
2566 Female, age 72, unknown 37.3
Nucleus accumbens
nTPM: 38.4
2391 Female, age 94, left hemisphere 41.3
2286 Male, age 75, left hemisphere 40.0
2698 Female, age 72, unknown 39.0
1806 Female, age 85, left hemisphere 38.1
1856 Female, age 91, right hemisphere 37.6
2824 Male, age 61, right hemisphere 37.5
1783 Male, age 74, unknown 37.1
2732 Male, age 80, right hemisphere 36.6
Nucleus basalis of Meynert
nTPM: 37.6
2821 Male, age 75, both hemispheres 38.3
2393 Male, age 80, right hemisphere 38.1
2569 Male, age 61, both hemispheres 37.3
2484 Female, age 94, left hemisphere 36.8
Nucleus of the diagonal band
nTPM: 37.6
1812 Female, age 91, both hemispheres 38.3
2195 Female, age 85, both hemispheres 38.3
1979 Male, age 74, unknown 37.5
2775 Male, age 80, right hemisphere 37.5
2029 Male, age 61, right hemisphere 36.6
Olfactory tubercle
nTPM: 37.4
2856 Male, age 75, right hemisphere 38.7
1846 Male, age 80, right hemisphere 38.5
1998 Female, age 91, both hemispheres 36.7
2487 Female, age 94, left hemisphere 35.9
Putamen
nTPM: 38.6
2482 Female, age 94, left hemisphere 40.9
1829 Male, age 74, unknown 39.1
1937 Female, age 91, right hemisphere 38.9
2466 Female, age 79, unknown 38.4
1838 Male, age 80, right hemisphere 37.7
2647 Male, age 75, left hemisphere 37.7
2489 Female, age 72, unknown 37.6
Septal nuclei
nTPM: 37.7
2199 Male, age 80, right hemisphere 38.5
2009 Female, age 91, both hemispheres 38.2
2031 Female, age 72, unknown 38.2
2629 Female, age 94, right hemisphere 38.1
1960 Male, age 74, unknown 37.9
2394 Male, age 61, left hemisphere 36.6
2059 Female, age 85, both hemispheres 36.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.5
Samples: 246

Max nTPM: 66.3
Min nTPM: 23.4
Std nTPM: 5.5
Median nTPM: 33.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 52.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 47.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 46.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 46.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 46.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.9
Samples: 246

Max nTPM: 62.4
Min nTPM: 21.9
Std nTPM: 6.1
Median nTPM: 31.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 62.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 57.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 57.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 53.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 50.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 49.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 49.5
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 47.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 47.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 46.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 44.8
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Brain - Putamen (basal ganglia)
Average nTPM: 34.9
Samples: 205

Max nTPM: 56.1
Min nTPM: 24.6
Std nTPM: 5.1
Median nTPM: 34.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 56.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 49.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 46.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 46.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 46.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 46.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 46.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 45.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 45.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 44.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.7
FF:10164-103B2 76 years, female 100.7
Globus pallidus
Scaled Tags Per Million: 147.6
FF:10175-103C4 60 years, female 170.5
FF:10161-103A8 76 years, female 124.8
Nucleus accumbens
Scaled Tags Per Million: 69.1
FF:10037-101F1 23-56 years, mixed 69.1
Putamen
Scaled Tags Per Million: 118.3
FF:10176-103C5 60 years, female 118.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.3
Pig sample Sample description nTPM
Caudate
nTPM: 39.0
Samples: 4

Max nTPM: 40.1
Min nTPM: 36.1
Sample A Female 39.8
Sample B Female 40.1
Sample C Male 39.9
Sample D Male 36.1
Putamen
nTPM: 44.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 38.2
Sample A Female 38.2
Sample B Female 38.8
Sample C Male 56.7
Sample D Male 43.6
Septum
nTPM: 41.2
Samples: 4

Max nTPM: 46.9
Min nTPM: 38.1
Sample A Female 46.9
Sample B Female 39.1
Sample C Male 40.7
Sample D Male 38.1
Ventral pallidum
nTPM: 37.7
Samples: 4

Max nTPM: 41.1
Min nTPM: 33.7
Sample A Female 39.4
Sample B Female 41.1
Sample C Male 33.7
Sample D Male 36.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 62.1
Samples: 4

Max nTPM: 68.0
Min nTPM: 56.4
Sample A Male 68.0
Sample B Male 56.4
Sample C Female 67.1
Sample D Female 57.0
Septum
nTPM: 51.4
Samples: 4

Max nTPM: 52.9
Min nTPM: 49.5
Sample A Male 49.5
Sample B Male 52.9
Sample C Female 52.5
Sample D Female 50.8
Ventral forebrain
nTPM: 55.7
Samples: 4

Max nTPM: 58.9
Min nTPM: 52.1
Sample A Male 57.4
Sample B Male 54.5
Sample C Female 58.9
Sample D Female 52.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.4
69105321 Antisense, RP_050316_02_B12, Mouse strain C57BL/6J (56 days, male) 8.4
Pallidum
Expression energy: 6.8
69105321 Antisense, RP_050316_02_B12, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.