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SH3PXD2A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:22.5 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:4.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2586 Male, age 75, left hemisphere 58.3
2666 Male, age 74, left hemisphere 36.9
1830 Male, age 51, unknown 36.0
2019 Male, age 18, unknown 35.0
1833 Male, age 53, unknown 34.2
2411 Female, age 72, unknown 32.5
2828 Female, age 72, unknown 29.5
1870 Female, age 42, unknown 27.1
1827 Male, age 72, unknown 26.6
2219 Male, age 76, both hemispheres 23.6
Dorsal raphe nucleus
nTPM: 19.7
1828 Male, age 53, unknown 23.3
2750 Male, age 76, both hemispheres 23.2
2016 Female, age 72, unknown 21.7
2047 Male, age 72, unknown 18.3
2298 Female, age 72, unknown 11.7
Inferior colliculus
nTPM: 20.6
2849 Male, age 72, unknown 25.8
1890 Male, age 53, unknown 21.4
1848 Female, age 42, unknown 20.9
2097 Female, age 72, unknown 14.4
Median raphe nucleus
nTPM: 21.8
2220 Male, age 76, midline 21.8
Pedunculopontine tegmental nucleus
nTPM: 21.2
2334 Male, age 80, both hemispheres 23.8
2338 Male, age 61, both hemispheres 22.0
1921 Female, age 85, both hemispheres 17.7
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 26.0
2502 Female, age 75, unknown 24.4
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 17.6
2464 Female, age 72, unknown 24.7
1831 Male, age 72, unknown 21.4
2850 Male, age 76, both hemispheres 12.6
1840 Male, age 53, unknown 11.8
Periaquaductal grey, lateral
nTPM: 19.4
2053 Male, age 18, unknown 22.8
2272 Male, age 74, both hemispheres 20.1
2140 Male, age 76, both hemispheres 15.4
Pretectal area
nTPM: 24.7
2407 Male, age 75, both hemispheres 40.9
1815 Male, age 53, unknown 31.9
2007 Male, age 72, unknown 30.7
1816 Male, age 51, unknown 27.2
1817 Female, age 42, unknown 26.2
1944 Female, age 72, unknown 25.2
2316 Male, age 76, right hemisphere 23.7
2825 Male, age 18, unknown 23.0
2224 Female, age 72, unknown 16.2
2273 Male, age 74, both hemispheres 15.0
2667 Female, age 75, unknown 11.3
Red nucleus
nTPM: 40.9
2588 Male, age 74, left hemisphere 66.8
2503 Female, age 72, unknown 47.4
2584 Male, age 75, left hemisphere 43.5
1865 Male, age 51, unknown 42.8
1904 Male, age 53, unknown 41.5
2725 Female, age 75, unknown 41.2
2785 Male, age 18, unknown 40.3
2227 Male, age 72, unknown 38.0
2769 Male, age 72, unknown 37.9
2823 Male, age 76, right hemisphere 32.8
1954 Female, age 42, unknown 31.0
1821 Female, age 72, unknown 28.2
Substantia nigra
nTPM: 25.5
2583 Male, age 75, right hemisphere 39.6
2590 Female, age 75, unknown 36.9
2665 Male, age 74, both hemispheres 33.1
1941 Male, age 53, unknown 25.7
1889 Female, age 72, unknown 24.2
1851 Male, age 51, unknown 24.1
2699 Male, age 18, unknown 20.8
2409 Female, age 72, unknown 20.0
1916 Female, age 42, unknown 17.4
2241 Male, age 72, unknown 12.9
Superior colliculus
nTPM: 32.1
1995 Male, age 72, unknown 40.6
2664 Male, age 75, both hemispheres 39.4
2668 Female, age 75, unknown 37.8
1913 Female, age 42, unknown 36.5
2587 Male, age 74, left hemisphere 33.6
1839 Male, age 51, unknown 30.0
2261 Male, age 18, unknown 28.5
2087 Female, age 72, unknown 26.4
1796 Male, age 53, unknown 25.1
1895 Male, age 76, right hemisphere 22.7
Ventral tegmental area
nTPM: 25.2
2223 Female, age 72, unknown 32.1
2410 Female, age 72, unknown 29.6
2218 Male, age 76, both hemispheres 24.1
2021 Male, age 53, unknown 22.3
1915 Female, age 42, unknown 22.0
1942 Male, age 51, unknown 21.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.5
Samples: 139

Max nTPM: 55.8
Min nTPM: 8.4
Std nTPM: 11.2
Median nTPM: 19.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 54.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 52.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 51.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 50.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 49.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 43.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.1
FF:10158-103A5 76 years, female 15.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.5
Pig sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.5
Sample A Female 14.0
Sample B Female 13.5
Sample C Male 18.2
Sample D Male 19.2
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.1
Sample B Female 10.0
Sample C Male 10.7
Sample D Male 9.1
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 25.4
Min nTPM: 16.2
Sample A Female 18.3
Sample B Female 25.4
Sample C Male 16.2
Sample D Male 17.7
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 65.3
Min nTPM: 15.7
Sample A Female 29.8
Sample B Female 65.3
Sample C Male 15.7
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.5
Sample A Male 4.5
Sample B Male 5.1
Sample C Female 4.9
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69873720 Antisense, RP_050512_01_H01, Mouse strain C57BL/6J (56 days, male) 1.5
70305544 Antisense, RP_050609_04_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.