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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.2 nTPM
HPA:11.2 nTPM
GTEx:11.0 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:17.5 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
1870 Female, age 42, unknown 10.5
2219 Male, age 76, both hemispheres 10.2
2411 Female, age 72, unknown 9.8
2019 Male, age 18, unknown 9.6
1833 Male, age 53, unknown 9.5
1827 Male, age 72, unknown 8.7
1830 Male, age 51, unknown 8.7
2666 Male, age 74, left hemisphere 7.4
2828 Female, age 72, unknown 7.0
2586 Male, age 75, left hemisphere 5.9
Dorsal raphe nucleus
nTPM: 9.6
2298 Female, age 72, unknown 10.7
2750 Male, age 76, both hemispheres 10.3
1828 Male, age 53, unknown 9.5
2047 Male, age 72, unknown 9.5
2016 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 9.2
2097 Female, age 72, unknown 10.9
1848 Female, age 42, unknown 9.6
2849 Male, age 72, unknown 8.3
1890 Male, age 53, unknown 8.1
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Pedunculopontine tegmental nucleus
nTPM: 9.9
1921 Female, age 85, both hemispheres 10.5
2334 Male, age 80, both hemispheres 10.0
2338 Male, age 61, both hemispheres 9.2
Periaquaductal grey, anterior
nTPM: 9.4
1947 Male, age 18, unknown 9.9
2502 Female, age 75, unknown 9.3
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 8.6
1840 Male, age 53, unknown 9.5
2464 Female, age 72, unknown 9.3
1831 Male, age 72, unknown 8.2
2850 Male, age 76, both hemispheres 7.3
Periaquaductal grey, lateral
nTPM: 7.9
2053 Male, age 18, unknown 8.6
2272 Male, age 74, both hemispheres 8.6
2140 Male, age 76, both hemispheres 6.4
Pretectal area
nTPM: 9.4
1944 Female, age 72, unknown 10.7
2007 Male, age 72, unknown 10.6
1816 Male, age 51, unknown 10.3
2224 Female, age 72, unknown 10.1
1817 Female, age 42, unknown 9.9
1815 Male, age 53, unknown 9.6
2273 Male, age 74, both hemispheres 9.6
2667 Female, age 75, unknown 8.8
2825 Male, age 18, unknown 8.4
2407 Male, age 75, both hemispheres 8.0
2316 Male, age 76, right hemisphere 7.6
Red nucleus
nTPM: 8.6
1821 Female, age 72, unknown 10.9
2725 Female, age 75, unknown 9.6
2503 Female, age 72, unknown 9.0
1954 Female, age 42, unknown 8.7
1904 Male, age 53, unknown 8.6
2227 Male, age 72, unknown 8.3
2588 Male, age 74, left hemisphere 8.2
2769 Male, age 72, unknown 8.1
1865 Male, age 51, unknown 8.0
2785 Male, age 18, unknown 7.9
2584 Male, age 75, left hemisphere 7.8
2823 Male, age 76, right hemisphere 7.7
Substantia nigra
nTPM: 11.2
2241 Male, age 72, unknown 15.4
2409 Female, age 72, unknown 14.3
1916 Female, age 42, unknown 13.3
1851 Male, age 51, unknown 11.6
1941 Male, age 53, unknown 11.2
1889 Female, age 72, unknown 11.0
2590 Female, age 75, unknown 9.5
2699 Male, age 18, unknown 9.3
2665 Male, age 74, both hemispheres 8.2
2583 Male, age 75, right hemisphere 7.7
Superior colliculus
nTPM: 8.6
1895 Male, age 76, right hemisphere 10.1
2587 Male, age 74, left hemisphere 10.1
2668 Female, age 75, unknown 9.2
2087 Female, age 72, unknown 9.1
2261 Male, age 18, unknown 9.1
1796 Male, age 53, unknown 8.8
1839 Male, age 51, unknown 8.8
1913 Female, age 42, unknown 8.5
1995 Male, age 72, unknown 6.6
2664 Male, age 75, both hemispheres 5.8
Ventral tegmental area
nTPM: 10.5
2410 Female, age 72, unknown 12.0
2218 Male, age 76, both hemispheres 11.4
1915 Female, age 42, unknown 11.0
2223 Female, age 72, unknown 10.4
1942 Male, age 51, unknown 9.5
2021 Male, age 53, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 27.3
Min nTPM: 5.3
Std nTPM: 3.5
Median nTPM: 9.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 17.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 17.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 18.6
Sample C Male 23.9
Sample D Male 17.3
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 19.3
Min nTPM: 16.3
Sample B Female 16.5
Sample C Male 19.3
Sample D Male 16.3
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.0
Sample A Female 22.0
Sample B Female 16.9
Sample C Male 20.9
Sample D Male 14.0
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 23.3
Min nTPM: 14.6
Sample A Female 18.0
Sample B Female 14.6
Sample C Male 23.3
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.0
Sample A Male 16.0
Sample B Male 18.3
Sample C Female 17.6
Sample D Female 18.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
68203492 Antisense, RP_041208_01_C12, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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