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ZMIZ1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:13.7 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:20.0 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2586 Male, age 75, left hemisphere 52.1
1830 Male, age 51, unknown 33.6
1833 Male, age 53, unknown 32.7
2666 Male, age 74, left hemisphere 32.4
1870 Female, age 42, unknown 32.2
2828 Female, age 72, unknown 32.2
2411 Female, age 72, unknown 28.2
1827 Male, age 72, unknown 25.6
2219 Male, age 76, both hemispheres 23.9
2019 Male, age 18, unknown 23.8
Dorsal raphe nucleus
nTPM: 28.1
2047 Male, age 72, unknown 32.7
2016 Female, age 72, unknown 32.4
1828 Male, age 53, unknown 30.0
2750 Male, age 76, both hemispheres 24.6
2298 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 36.0
2849 Male, age 72, unknown 45.3
1848 Female, age 42, unknown 37.7
1890 Male, age 53, unknown 33.6
2097 Female, age 72, unknown 27.3
Median raphe nucleus
nTPM: 30.0
2220 Male, age 76, midline 30.0
Pedunculopontine tegmental nucleus
nTPM: 23.9
2338 Male, age 61, both hemispheres 24.2
2334 Male, age 80, both hemispheres 24.0
1921 Female, age 85, both hemispheres 23.4
Periaquaductal grey, anterior
nTPM: 29.2
2502 Female, age 75, unknown 36.0
1947 Male, age 18, unknown 26.1
1795 Male, age 51, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 31.3
2850 Male, age 76, both hemispheres 33.8
1840 Male, age 53, unknown 33.4
2464 Female, age 72, unknown 30.1
1831 Male, age 72, unknown 27.7
Periaquaductal grey, lateral
nTPM: 29.5
2140 Male, age 76, both hemispheres 36.1
2053 Male, age 18, unknown 30.9
2272 Male, age 74, both hemispheres 21.4
Pretectal area
nTPM: 24.4
2825 Male, age 18, unknown 36.1
2407 Male, age 75, both hemispheres 32.1
2316 Male, age 76, right hemisphere 29.0
2667 Female, age 75, unknown 26.7
2224 Female, age 72, unknown 22.7
1817 Female, age 42, unknown 22.5
2273 Male, age 74, both hemispheres 22.4
1815 Male, age 53, unknown 21.4
2007 Male, age 72, unknown 19.3
1944 Female, age 72, unknown 18.9
1816 Male, age 51, unknown 16.8
Red nucleus
nTPM: 33.5
2584 Male, age 75, left hemisphere 41.8
1954 Female, age 42, unknown 38.7
2769 Male, age 72, unknown 38.6
2227 Male, age 72, unknown 37.1
2588 Male, age 74, left hemisphere 36.5
1904 Male, age 53, unknown 34.0
1865 Male, age 51, unknown 33.2
2823 Male, age 76, right hemisphere 31.2
1821 Female, age 72, unknown 30.8
2503 Female, age 72, unknown 29.6
2785 Male, age 18, unknown 25.5
2725 Female, age 75, unknown 25.4
Substantia nigra
nTPM: 28.7
2699 Male, age 18, unknown 43.0
2583 Male, age 75, right hemisphere 35.3
1916 Female, age 42, unknown 28.9
2665 Male, age 74, both hemispheres 28.9
1851 Male, age 51, unknown 26.9
1941 Male, age 53, unknown 26.6
2590 Female, age 75, unknown 25.7
2241 Male, age 72, unknown 25.2
2409 Female, age 72, unknown 23.1
1889 Female, age 72, unknown 23.0
Superior colliculus
nTPM: 27.8
2664 Male, age 75, both hemispheres 46.7
1839 Male, age 51, unknown 36.4
2587 Male, age 74, left hemisphere 27.8
2668 Female, age 75, unknown 27.8
1796 Male, age 53, unknown 26.5
1995 Male, age 72, unknown 25.3
1895 Male, age 76, right hemisphere 24.8
1913 Female, age 42, unknown 22.1
2087 Female, age 72, unknown 20.8
2261 Male, age 18, unknown 20.1
Ventral tegmental area
nTPM: 30.2
1942 Male, age 51, unknown 33.6
2223 Female, age 72, unknown 31.2
2021 Male, age 53, unknown 30.7
1915 Female, age 42, unknown 29.5
2218 Male, age 76, both hemispheres 28.2
2410 Female, age 72, unknown 28.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 139

Max nTPM: 39.2
Min nTPM: 1.2
Std nTPM: 6.2
Median nTPM: 13.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 39.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 32.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 27.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 26.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.1
FF:10158-103A5 76 years, female 106.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.3
Pig sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 26.7
Min nTPM: 19.4
Sample A Female 26.7
Sample B Female 20.9
Sample C Male 19.4
Sample D Male 26.0
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 24.9
Min nTPM: 19.4
Sample B Female 21.0
Sample C Male 24.9
Sample D Male 19.4
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.1
Sample A Female 21.4
Sample B Female 21.6
Sample C Male 25.8
Sample D Male 21.1
Superior colliculi
nTPM: 22.5
Samples: 4

Max nTPM: 25.9
Min nTPM: 17.9
Sample A Female 24.3
Sample B Female 21.7
Sample C Male 17.9
Sample D Male 25.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.5
Sample A Male 17.5
Sample B Male 20.3
Sample C Female 21.5
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
70231779 Antisense, RP_050526_01_H08, Mouse strain C57BL/6J (56 days, male) 6.9
74988259 Antisense, RP_060315_05_C02, Mouse strain C57BL/6J (56 days, male) 6.5
74359598 Antisense, RP_051219_04_H10, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.