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PPIF
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:36.6 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:34.7 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Hippocampus
nTPM: 38.1
1898 Male, age 80, left hemisphere 42.7
1911 Female, age 85, right hemisphere 39.0
2529 Female, age 94, left hemisphere 37.9
2148 Female, age 91, left hemisphere 37.5
1855 Male, age 76, left hemisphere 36.9
2621 Female, age 67, right hemisphere 34.7
Dentate gyrus
nTPM: 35.9
2528 Male, age 74, both hemispheres 40.1
2010 Male, age 76, both hemispheres 37.4
2246 Female, age 85, both hemispheres 35.3
2530 Female, age 94, left hemisphere 35.3
1927 Female, age 91, both hemispheres 34.9
2531 Female, age 67, both hemispheres 32.1
Entorhinal gyrus
nTPM: 36.6
2117 Female, age 91, right hemisphere 41.8
2764 Male, age 80, right hemisphere 40.2
1787 Male, age 76, left hemisphere 36.1
1938 Female, age 85, left hemisphere 34.8
2613 Female, age 94, left hemisphere 34.0
2686 Male, age 75, right hemisphere 32.9
Hippocampus, CA1
nTPM: 36.0
2527 Male, age 74, both hemispheres 38.8
1873 Female, age 85, both hemispheres 38.3
2749 Male, age 80, left hemisphere 35.2
2082 Female, age 91, right hemisphere 35.1
2045 Male, age 76, both hemispheres 32.8
Hippocampus, CA2
nTPM: 37.2
2249 Male, age 74, both hemispheres 42.3
1963 Male, age 80, left hemisphere 38.7
1940 Female, age 85, left hemisphere 37.3
2437 Female, age 94, left hemisphere 35.8
2113 Female, age 91, right hemisphere 35.4
1892 Male, age 76, both hemispheres 33.7
Hippocampus, CA3
nTPM: 37.0
2436 Male, age 74, both hemispheres 48.6
1891 Female, age 85, both hemispheres 39.4
1867 Male, age 76, both hemispheres 35.4
2620 Female, age 94, left hemisphere 34.6
2861 Female, age 67, both hemispheres 32.7
2137 Male, age 80, left hemisphere 31.2
Parahippocampal cortex
nTPM: 35.0
2692 Male, age 74, both hemispheres 37.4
1850 Male, age 80, both hemispheres 37.1
2018 Male, age 76, both hemispheres 36.4
2693 Female, age 94, both hemispheres 35.9
2532 Female, age 72, left hemisphere 35.3
1933 Female, age 85, both hemispheres 34.8
1990 Female, age 91, right hemisphere 34.7
2245 Female, age 91, both hemispheres 34.6
2250 Female, age 67, right hemisphere 32.9
2622 Female, age 67, right hemisphere 30.7
Perirhinal gyrus
nTPM: 34.2
1794 Male, age 80, right hemisphere 35.8
2848 Male, age 76, right hemisphere 35.2
1847 Female, age 91, left hemisphere 34.7
2521 Female, age 94, right hemisphere 33.8
1841 Female, age 85, right hemisphere 31.4
Subiculum
nTPM: 38.0
2729 Female, age 91, right hemisphere 39.9
2042 Male, age 76, both hemispheres 38.7
2619 Male, age 74, both hemispheres 38.3
1901 Male, age 80, both hemispheres 38.0
2438 Female, age 94, left hemisphere 36.7
1977 Female, age 85, both hemispheres 36.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.6
Samples: 197

Max nTPM: 62.7
Min nTPM: 12.8
Std nTPM: 8.6
Median nTPM: 35.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 62.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 62.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 61.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 61.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 57.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 56.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 52.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 50.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 50.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 50.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 50.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 73.9
FF:10169-103B7 60 years, female 93.1
FF:10153-102I9 76 years, female 54.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.8
Sample A Female 19.6
Sample B Female 14.8
Sample C Male 17.1
Sample D Male 15.7
Entorhinal cortex
nTPM: 13.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.0
Sample A Female 13.1
Sample B Female 15.4
Sample C Male 13.7
Sample D Male 11.0
Subiculum
nTPM: 13.3
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.1
Sample A Female 15.3
Sample B Female 12.9
Sample C Male 13.0
Sample D Male 12.1
Ventral hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.3
Sample A Female 18.0
Sample B Female 14.1
Sample C Male 16.9
Sample D Male 13.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.8
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.8
Sample A Male 25.1
Sample B Male 24.8
Sample C Female 31.3
Sample D Female 25.8
Hippocampal formation
nTPM: 34.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 32.5
Sample A Male 35.6
Sample B Male 32.5
Sample C Female 35.3
Sample D Female 35.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68269060 Antisense, RP_041208_01_G11, Mouse strain C57BL/6J (56 days, male) 1.6

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