ABOUTMENU
HELP
NEWS
RAD51C
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA:15.7 nTPM
GTEx:12.1 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:1.5 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.2
2288 Male, age 75, left hemisphere 15.4
1781 Male, age 74, unknown 13.6
2289 Male, age 61, right hemisphere 13.0
2481 Female, age 94, left hemisphere 13.0
1854 Male, age 80, left hemisphere 12.9
1857 Female, age 85, left hemisphere 12.8
2290 Female, age 72, unknown 12.4
2846 Female, age 79, unknown 12.3
Claustrum
nTPM: 15.4
1956 Male, age 74, unknown 16.0
2491 Male, age 75, both hemispheres 16.0
2645 Female, age 72, unknown 15.9
2284 Female, age 91, both hemispheres 15.8
2392 Female, age 94, both hemispheres 15.7
2292 Female, age 85, both hemispheres 15.6
2568 Male, age 61, both hemispheres 14.8
2198 Male, age 80, both hemispheres 14.5
2196 Female, age 79, unknown 14.0
Globus pallidus, externus
nTPM: 14.8
2567 Female, age 72, unknown 16.4
2395 Male, age 75, both hemispheres 16.0
2646 Male, age 61, right hemisphere 14.3
2772 Female, age 79, unknown 13.7
1996 Male, age 80, right hemisphere 13.4
Globus pallidus, internus
nTPM: 15.0
2111 Female, age 85, right hemisphere 16.6
2566 Female, age 72, unknown 16.3
2778 Female, age 91, both hemispheres 15.4
2037 Male, age 80, right hemisphere 14.6
2287 Male, age 75, right hemisphere 14.4
1818 Male, age 74, unknown 14.0
2483 Female, age 94, right hemisphere 13.8
Nucleus accumbens
nTPM: 13.1
2286 Male, age 75, left hemisphere 15.0
2391 Female, age 94, left hemisphere 14.0
2824 Male, age 61, right hemisphere 13.9
2732 Male, age 80, right hemisphere 13.3
2698 Female, age 72, unknown 12.4
1856 Female, age 91, right hemisphere 12.1
1806 Female, age 85, left hemisphere 12.0
1783 Male, age 74, unknown 11.8
Nucleus basalis of Meynert
nTPM: 13.9
2569 Male, age 61, both hemispheres 14.3
2484 Female, age 94, left hemisphere 14.0
2393 Male, age 80, right hemisphere 13.7
2821 Male, age 75, both hemispheres 13.5
Nucleus of the diagonal band
nTPM: 15.1
2029 Male, age 61, right hemisphere 17.4
2775 Male, age 80, right hemisphere 15.5
1812 Female, age 91, both hemispheres 14.8
2195 Female, age 85, both hemispheres 14.7
1979 Male, age 74, unknown 13.3
Olfactory tubercle
nTPM: 15.7
1998 Female, age 91, both hemispheres 17.4
2487 Female, age 94, left hemisphere 15.3
1846 Male, age 80, right hemisphere 15.1
2856 Male, age 75, right hemisphere 15.0
Putamen
nTPM: 13.6
2647 Male, age 75, left hemisphere 14.7
2489 Female, age 72, unknown 14.3
2466 Female, age 79, unknown 13.9
1838 Male, age 80, right hemisphere 13.4
1937 Female, age 91, right hemisphere 13.3
2482 Female, age 94, left hemisphere 13.1
1829 Male, age 74, unknown 12.7
Septal nuclei
nTPM: 14.5
2009 Female, age 91, both hemispheres 15.5
2059 Female, age 85, both hemispheres 15.2
2031 Female, age 72, unknown 14.9
2394 Male, age 61, left hemisphere 14.6
2629 Female, age 94, right hemisphere 14.4
1960 Male, age 74, unknown 14.0
2199 Male, age 80, right hemisphere 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.3
Samples: 246

Max nTPM: 26.4
Min nTPM: 4.2
Std nTPM: 3.1
Median nTPM: 10.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 26.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 26.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 21.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 20.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 19.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 19.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 18.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 18.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 18.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 17.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 41.8
Min nTPM: 4.9
Std nTPM: 3.7
Median nTPM: 11.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 41.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 22.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 21.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 21.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 19.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 19.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 19.6
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 18.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 18.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 18.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.1
Samples: 205

Max nTPM: 28.0
Min nTPM: 5.4
Std nTPM: 3.2
Median nTPM: 11.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 28.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 23.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 23.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 21.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 21.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 20.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 19.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 19.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 19.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 18.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 17.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 25.0
FF:10175-103C4 60 years, female 25.2
FF:10161-103A8 76 years, female 24.7
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 29.1
FF:10176-103C5 60 years, female 29.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Caudate
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.0
Sample A Female 3.7
Sample B Female 3.0
Sample C Male 3.0
Sample D Male 3.2
Putamen
nTPM: 3.5
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.9
Sample A Female 4.6
Sample B Female 3.0
Sample C Male 2.9
Sample D Male 3.3
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.8
Sample A Female 4.4
Sample B Female 4.1
Sample C Male 3.8
Sample D Male 4.4
Ventral pallidum
nTPM: 3.7
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 3.6
Sample C Male 3.6
Sample D Male 4.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.5
Sample D Female 0.3
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.5
Sample C Female 1.1
Sample D Female 2.2
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Male 1.7
Sample B Male 0.5
Sample C Female 1.0
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70300989 Antisense, RP_050607_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70300989 Antisense, RP_050607_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.