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CDK5RAP3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.7 nTPM
HPA:84.7 nTPM
GTEx:42.9 nTPM
FANTOM5:48.4 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:24.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.9
2411 Female, age 72, unknown 87.1
2586 Male, age 75, left hemisphere 87.1
1827 Male, age 72, unknown 86.7
2828 Female, age 72, unknown 84.1
1870 Female, age 42, unknown 83.7
2019 Male, age 18, unknown 83.1
2219 Male, age 76, both hemispheres 82.7
1833 Male, age 53, unknown 82.6
1830 Male, age 51, unknown 81.9
2666 Male, age 74, left hemisphere 80.3
Dorsal raphe nucleus
nTPM: 84.1
2047 Male, age 72, unknown 85.6
2298 Female, age 72, unknown 85.6
2016 Female, age 72, unknown 83.4
1828 Male, age 53, unknown 83.0
2750 Male, age 76, both hemispheres 82.8
Inferior colliculus
nTPM: 83.2
1890 Male, age 53, unknown 84.1
2097 Female, age 72, unknown 84.0
2849 Male, age 72, unknown 82.8
1848 Female, age 42, unknown 81.9
Median raphe nucleus
nTPM: 83.6
2220 Male, age 76, midline 83.6
Pedunculopontine tegmental nucleus
nTPM: 84.4
2338 Male, age 61, both hemispheres 86.6
1921 Female, age 85, both hemispheres 83.4
2334 Male, age 80, both hemispheres 83.3
Periaquaductal grey, anterior
nTPM: 84.7
1795 Male, age 51, unknown 86.1
1947 Male, age 18, unknown 85.2
2502 Female, age 75, unknown 82.9
Periaquaductal grey, dorsal
nTPM: 84.1
1840 Male, age 53, unknown 84.9
1831 Male, age 72, unknown 84.7
2850 Male, age 76, both hemispheres 83.8
2464 Female, age 72, unknown 83.1
Periaquaductal grey, lateral
nTPM: 84.3
2053 Male, age 18, unknown 84.6
2272 Male, age 74, both hemispheres 84.5
2140 Male, age 76, both hemispheres 83.9
Pretectal area
nTPM: 83.2
2825 Male, age 18, unknown 85.4
2273 Male, age 74, both hemispheres 84.3
2407 Male, age 75, both hemispheres 83.5
2007 Male, age 72, unknown 83.0
1816 Male, age 51, unknown 82.9
2224 Female, age 72, unknown 82.8
2667 Female, age 75, unknown 82.8
1815 Male, age 53, unknown 82.7
1817 Female, age 42, unknown 82.7
2316 Male, age 76, right hemisphere 82.6
1944 Female, age 72, unknown 82.3
Red nucleus
nTPM: 84.0
2588 Male, age 74, left hemisphere 85.9
1954 Female, age 42, unknown 85.6
2584 Male, age 75, left hemisphere 84.9
2503 Female, age 72, unknown 84.6
2769 Male, age 72, unknown 84.6
2725 Female, age 75, unknown 84.3
1904 Male, age 53, unknown 83.8
1821 Female, age 72, unknown 83.5
1865 Male, age 51, unknown 83.4
2227 Male, age 72, unknown 83.0
2785 Male, age 18, unknown 82.2
2823 Male, age 76, right hemisphere 82.2
Substantia nigra
nTPM: 83.0
2590 Female, age 75, unknown 86.1
1916 Female, age 42, unknown 85.3
1851 Male, age 51, unknown 84.9
2699 Male, age 18, unknown 83.3
2583 Male, age 75, right hemisphere 83.0
2409 Female, age 72, unknown 82.7
1941 Male, age 53, unknown 81.9
1889 Female, age 72, unknown 81.6
2665 Male, age 74, both hemispheres 81.3
2241 Male, age 72, unknown 79.9
Superior colliculus
nTPM: 83.7
2664 Male, age 75, both hemispheres 88.0
1796 Male, age 53, unknown 86.4
2587 Male, age 74, left hemisphere 83.6
1995 Male, age 72, unknown 83.4
1913 Female, age 42, unknown 83.1
2087 Female, age 72, unknown 82.9
1839 Male, age 51, unknown 82.8
2261 Male, age 18, unknown 82.8
2668 Female, age 75, unknown 82.4
1895 Male, age 76, right hemisphere 82.1
Ventral tegmental area
nTPM: 83.8
1915 Female, age 42, unknown 85.4
2410 Female, age 72, unknown 84.6
1942 Male, age 51, unknown 84.3
2021 Male, age 53, unknown 83.5
2218 Male, age 76, both hemispheres 83.0
2223 Female, age 72, unknown 81.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.9
Samples: 139

Max nTPM: 87.2
Min nTPM: 23.2
Std nTPM: 10.1
Median nTPM: 41.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 87.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 68.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 68.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 62.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 61.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 58.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 57.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.4
FF:10158-103A5 76 years, female 48.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 41.1
Min nTPM: 10.5
Sample A Female 41.1
Sample B Female 19.4
Sample C Male 12.6
Sample D Male 10.5
Periaqueductal gray
nTPM: 15.7
Samples: 3

Max nTPM: 19.6
Min nTPM: 11.0
Sample B Female 19.6
Sample C Male 16.5
Sample D Male 11.0
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 16.0
Sample A Female 25.5
Sample B Female 16.0
Sample C Male 17.4
Sample D Male 17.5
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 23.7
Min nTPM: 14.1
Sample A Female 23.7
Sample B Female 16.8
Sample C Male 16.2
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 23.2
Sample A Male 24.8
Sample B Male 23.2
Sample C Female 24.4
Sample D Female 25.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69080011 Antisense, RP_050324_01_C11, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.