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CAMTA2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:25.4 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Pig:46.7 nTPM
Mouse:64.1 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.5
2290 Female, age 72, unknown 9.5
2846 Female, age 79, unknown 9.5
1781 Male, age 74, unknown 9.1
1857 Female, age 85, left hemisphere 4.5
2288 Male, age 75, left hemisphere 2.4
1854 Male, age 80, left hemisphere 1.5
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 15.9
2645 Female, age 72, unknown 30.1
2568 Male, age 61, both hemispheres 27.6
2284 Female, age 91, both hemispheres 24.2
2491 Male, age 75, both hemispheres 16.4
2198 Male, age 80, both hemispheres 15.1
1956 Male, age 74, unknown 11.7
2392 Female, age 94, both hemispheres 8.6
2196 Female, age 79, unknown 6.6
2292 Female, age 85, both hemispheres 3.2
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 1.5
1783 Male, age 74, unknown 5.7
1856 Female, age 91, right hemisphere 4.3
1806 Female, age 85, left hemisphere 1.3
2824 Male, age 61, right hemisphere 1.1
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.3
2484 Female, age 94, left hemisphere 1.5
2393 Male, age 80, right hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 10.5
2029 Male, age 61, right hemisphere 17.2
2195 Female, age 85, both hemispheres 13.5
2775 Male, age 80, right hemisphere 12.2
1812 Female, age 91, both hemispheres 9.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 14.0
1998 Female, age 91, both hemispheres 17.9
2487 Female, age 94, left hemisphere 17.0
2856 Male, age 75, right hemisphere 12.3
1846 Male, age 80, right hemisphere 8.8
Putamen
nTPM: 6.3
2647 Male, age 75, left hemisphere 11.5
2489 Female, age 72, unknown 8.6
2466 Female, age 79, unknown 8.5
1829 Male, age 74, unknown 7.3
1838 Male, age 80, right hemisphere 6.4
1937 Female, age 91, right hemisphere 1.8
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 7.2
1960 Male, age 74, unknown 17.6
2629 Female, age 94, right hemisphere 12.2
2031 Female, age 72, unknown 10.0
2009 Female, age 91, both hemispheres 6.1
2059 Female, age 85, both hemispheres 4.9
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 73.9
Min nTPM: 4.5
Std nTPM: 10.1
Median nTPM: 22.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 73.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 49.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 48.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 47.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 46.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 44.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 44.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 43.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 43.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.4
Samples: 246

Max nTPM: 48.5
Min nTPM: 4.0
Std nTPM: 9.1
Median nTPM: 25.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 48.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 46.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 46.3
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 46.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 44.6
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 43.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 41.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 41.8
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 41.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 41.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 40.3
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Brain - Putamen (basal ganglia)
Average nTPM: 22.9
Samples: 205

Max nTPM: 51.2
Min nTPM: 4.4
Std nTPM: 8.9
Median nTPM: 21.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 51.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 50.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 48.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 48.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 45.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 42.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 41.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 39.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 39.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 38.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 38.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.0
FF:10164-103B2 76 years, female 65.0
Globus pallidus
Scaled Tags Per Million: 47.3
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 39.3
Nucleus accumbens
Scaled Tags Per Million: 75.5
FF:10037-101F1 23-56 years, mixed 75.5
Putamen
Scaled Tags Per Million: 82.9
FF:10176-103C5 60 years, female 82.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 46.7
Pig sample Sample description nTPM
Caudate
nTPM: 45.6
Samples: 4

Max nTPM: 56.7
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 47.2
Sample C Male 56.7
Sample D Male 42.4
Putamen
nTPM: 46.7
Samples: 4

Max nTPM: 58.3
Min nTPM: 26.0
Sample A Female 26.0
Sample B Female 45.1
Sample C Male 58.3
Sample D Male 57.5
Septum
nTPM: 31.8
Samples: 4

Max nTPM: 34.0
Min nTPM: 28.0
Sample A Female 33.5
Sample B Female 34.0
Sample C Male 31.8
Sample D Male 28.0
Ventral pallidum
nTPM: 38.9
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.6
Sample A Female 35.6
Sample B Female 36.5
Sample C Male 45.8
Sample D Male 37.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.8
Samples: 4

Max nTPM: 57.7
Min nTPM: 50.1
Sample A Male 50.1
Sample B Male 57.4
Sample C Female 50.1
Sample D Female 57.7
Septum
nTPM: 51.8
Samples: 4

Max nTPM: 54.8
Min nTPM: 47.7
Sample A Male 54.8
Sample B Male 54.2
Sample C Female 50.3
Sample D Female 47.7
Ventral forebrain
nTPM: 64.1
Samples: 4

Max nTPM: 67.1
Min nTPM: 60.6
Sample A Male 65.7
Sample B Male 60.6
Sample C Female 67.1
Sample D Female 62.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
69540339 Antisense, RP_050426_01_E09, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.6
69540339 Antisense, RP_050426_01_E09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.